ENSDARG00000097170


Danio rerio

Features
Gene ID: ENSDARG00000097170
  
Biological name :pcdh1a6
  
Synonyms : pcdh1a4 / pcdh1a6 / protocadherin 1 alpha 6
  
Possible biological names infered from orthology : Pcdha2 / Pcdha3 / protocadherin alpha 2 / protocadherin alpha 3
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 21563986
Gene end: 21649172
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000091369
Ensembl peptide - ENSDARP00000091373
NCBI entrez gene - 497127     See in Manteia.
RefSeq - NM_001024099
RefSeq Peptide - NP_001019270
swissprot - F1QHA3
swissprot - E7F4G4
ZFIN ID - ZDB-GENE-050202-4
ZFIN ID - ZDB-GENE-050203-2
Ensembl - ENSDARG00000097170
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Pcdha2ENSMUSG00000104148Mus musculus
 Pcdha3ENSMUSG00000102312Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh2ab5 / protocadherin 2 alpha b 5 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009034868
pcdh2ab11 / protocadherin 2 alpha b 11 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000008959356
si:ch73-233f7.1ENSDARG0000006190938
pcdh1g31 / protocadherin 1 gamma 31ENSDARG0000010067037
pcdh10a / protocadherin 10a / PCDH10* / Q9P2E7* / protocadherin 10*ENSDARG0000009972936
pcdh1g2 / protocadherin 1 gamma 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Protoca...ENSDARG0000010123236
pcdh1g30 / protocadherin 1 gamma 30ENSDARG0000010186536
pcdh1gb9 / protocadherin 1 gamma b 9 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000008847535
pcdh2g5 / pcdh2g17 / pcdh2g20 / pcdh2g28 / pcdh2g29 / pcdh2g13 / protocadherin 2 gamma 5 / Q9Y5E8* / PCDHB15* / protocadherin beta 15*ENSDARG0000009878835
pcdh1gb2 / protocadherin 1 gamma b 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000010130735
PCDHB15 / protocadherin beta 15 / Q9Y5E8*ENSDARG0000010133834
pcdh17 / protocadherin 17 / O14917*ENSDARG0000002704133
pcdh19 / protocadherin 19 / Q80TF3* / Q8TAB3*ENSDARG0000003434430
pcdh18a / protocadherin 18a / PCDH18* / Q9HCL0* / protocadherin 18*ENSDARG0000008980529
pcdh12 / protocadherin 12 / O55134* / Q9NPG4*ENSDARG0000007659428
PCDH8 / si:ch211-199f5.1 / O95206* / Q7TSK3* / protocadherin 8*ENSDARG0000010218528
pcdh18b / protocadherin 18b / Q9HCL0* / PCDH18* / Q8VHR0* / protocadherin 18*ENSDARG0000005249428
pcdh8 / protocadherin 8 / O95206*ENSDARG0000000646727


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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