ENSDARG00000101865


Danio rerio

Features
Gene ID: ENSDARG00000101865
  
Biological name :pcdh1g30
  
Synonyms : pcdh1g30 / protocadherin 1 gamma 30
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 21801030
Gene end: 21820133
  
Corresponding Affymetrix probe sets: Dr.8598.1.A1_at (Zebrafish Array)   NM_001024126_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000145036
Ensembl peptide - ENSDARP00000130785
NCBI entrez gene - 554014     See in Manteia.
RefSeq - NM_001024126
RefSeq Peptide - NP_001019297
swissprot - A0A0R4ICV7
ZFIN ID - ZDB-GENE-050609-23
Ensembl - ENSDARG00000101865
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh1g31 / protocadherin 1 gamma 31ENSDARG0000010067072
pcdh1g2 / protocadherin 1 gamma 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Protoca...ENSDARG0000010123245
pcdh2g5 / pcdh2g17 / pcdh2g20 / pcdh2g28 / pcdh2g29 / pcdh2g13 / protocadherin 2 gamma 5 / Q9Y5E8* / PCDHB15* / protocadherin beta 15*ENSDARG0000009878843
pcdh1gb9 / protocadherin 1 gamma b 9 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000008847541
pcdh1gb2 / protocadherin 1 gamma b 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...ENSDARG0000010130741
si:ch73-233f7.1ENSDARG0000006190940
pcdh2ab5 / protocadherin 2 alpha b 5 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009034836
pcdh10a / protocadherin 10a / PCDH10* / Q9P2E7* / protocadherin 10*ENSDARG0000009972936
pcdh1a6 / pcdh1a4 / protocadherin 1 alpha 6 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000009717035
pcdh2ab11 / protocadherin 2 alpha b 11 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*ENSDARG0000008959333
PCDHB15 / protocadherin beta 15 / Q9Y5E8*ENSDARG0000010133833
pcdh17 / protocadherin 17 / O14917*ENSDARG0000002704131
pcdh18a / protocadherin 18a / PCDH18* / Q9HCL0* / protocadherin 18*ENSDARG0000008980530
pcdh18b / protocadherin 18b / Q9HCL0* / PCDH18* / Q8VHR0* / protocadherin 18*ENSDARG0000005249429
pcdh19 / protocadherin 19 / Q80TF3* / Q8TAB3*ENSDARG0000003434429
pcdh12 / protocadherin 12 / O55134* / Q9NPG4*ENSDARG0000007659427
pcdh8 / protocadherin 8 / O95206*ENSDARG0000000646727
PCDH8 / si:ch211-199f5.1 / O95206* / Q7TSK3* / protocadherin 8*ENSDARG0000010218525


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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