Manteia

ENSDARG00000099729

Danio rerio

Features

Gene ID:	ENSDARG00000099729

Biological name :	pcdh10a

Synonyms :	pcdh10a / protocadherin 10a

Possible biological names infered from orthology :	PCDH10 / protocadherin 10 / Q9P2E7

Species:	Danio rerio

Chr. number:	1
Strand:	1
Band:
Gene start:	12763461
Gene end:	12797410

Corresponding Affymetrix probe sets:	Dr.13848.1.A1_at (Zebrafish Array) Dr.21026.1.A1_at (Zebrafish Array) Dr.21026.1.S1_at (Zebrafish Array) Dr.21790.1.A1_at (Zebrafish Array) NM_212571_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000137393 Ensembl peptide - ENSDARP00000152743 Ensembl peptide - ENSDARP00000144991 Ensembl peptide - ENSDARP00000139555 Ensembl peptide - ENSDARP00000132257 NCBI entrez gene - 259186 See in Manteia. RefSeq - NM_212571 RefSeq Peptide - NP_997736 swissprot - A0A0R4IQH6 swissprot - A0A0R4IBH8 swissprot - A0A0R4IWN7 swissprot - Q6NYV7 ZFIN ID - ZDB-GENE-020731-1 Ensembl - ENSDARG00000099729

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
PCDH10	ENSG00000138650	Homo sapiens
Pcdh10	ENSMUSG00000049100	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
si:ch73-233f7.1	ENSDARG00000061909	47
pcdh17 / protocadherin 17 / O14917*	ENSDARG00000027041	39
pcdh18b / protocadherin 18b / Q9HCL0* / PCDH18* / Q8VHR0* / protocadherin 18*	ENSDARG00000052494	37
pcdh19 / protocadherin 19 / Q80TF3* / Q8TAB3*	ENSDARG00000034344	37
pcdh18a / protocadherin 18a / PCDH18* / Q9HCL0* / protocadherin 18*	ENSDARG00000089805	36
pcdh2g5 / pcdh2g17 / pcdh2g20 / pcdh2g28 / pcdh2g29 / pcdh2g13 / protocadherin 2 gamma 5 / Q9Y5E8* / PCDHB15* / protocadherin beta 15*	ENSDARG00000098788	35
pcdh2ab5 / protocadherin 2 alpha b 5 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*	ENSDARG00000090348	35
pcdh1g31 / protocadherin 1 gamma 31	ENSDARG00000100670	34
pcdh2ab11 / protocadherin 2 alpha b 11 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*	ENSDARG00000089593	34
pcdh1a6 / pcdh1a4 / protocadherin 1 alpha 6 / Pcdha3* / Pcdha2* / protocadherin alpha 2* / protocadherin alpha 3*	ENSDARG00000097170	34
pcdh1g30 / protocadherin 1 gamma 30	ENSDARG00000101865	34
pcdh1g2 / protocadherin 1 gamma 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Protoca...	ENSDARG00000101232	33
pcdh1gb9 / protocadherin 1 gamma b 9 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...	ENSDARG00000088475	33
pcdh1gb2 / protocadherin 1 gamma b 2 / Q9Y5E8* / Q91XY4* / Pcdhga3* / Pcdhga4* / Pcdhga5* / Pcdhga6* / Pcdhga7* / Pcdhga8* / PCDHB15* / Pcdhga10* / Pcdhga11* / protocadherin beta 15* / Prot...	ENSDARG00000101307	32
PCDHB15 / protocadherin beta 15 / Q9Y5E8*	ENSDARG00000101338	32
pcdh12 / protocadherin 12 / O55134* / Q9NPG4*	ENSDARG00000076594	31
PCDH8 / si:ch211-199f5.1 / O95206* / Q7TSK3* / protocadherin 8*	ENSDARG00000102185	31
pcdh8 / protocadherin 8 / O95206*	ENSDARG00000006467	28

Protein motifs (from Interpro)

Interpro ID	Name
IPR002126	Cadherin
IPR013164	Cadherin, N-terminal
IPR015919	Cadherin-like
IPR020894	Cadherin conserved site
IPR032455	Cadherin, cytoplasmic C-terminal domain

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007155	cell adhesion	IEA
biological_process	GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules	IEA
cellular_component	GO:0005886	plasma membrane	IEA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
molecular_function	GO:0005509	calcium ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr