ENSGALG00000031129


Gallus gallus

Features
Gene ID: ENSGALG00000031129
  
Biological name :HMCN1
  
Synonyms : hemicentin 1 / HMCN1
  
Possible biological names infered from orthology : D3YXG0 / Q96RW7
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 10119575
Gene end: 10310613
  
Corresponding Affymetrix probe sets: Gga.10681.1.S1_at (Chicken Array)   Gga.10681.1.S1_x_at (Chicken Array)   Gga.10681.2.S1_at (Chicken Array)   Gga.10681.2.S1_s_at (Chicken Array)   Gga.13025.1.S1_at (Chicken Array)   GgaAffx.3213.1.S1_at (Chicken Array)   GgaAffx.3213.2.S1_at (Chicken Array)   GgaAffx.3213.3.S1_s_at (Chicken Array)   GgaAffx.3213.4.S1_s_at (Chicken Array)   GgaAffx.3220.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045432
Ensembl peptide - ENSGALP00000057876
Ensembl peptide - ENSGALP00000057404
Ensembl peptide - ENSGALP00000055118
Ensembl peptide - ENSGALP00000054118
NCBI entrez gene - 429823     See in Manteia.
RefSeq - XM_015290595
RefSeq - XM_015290590
RefSeq - XM_015290591
RefSeq - XM_015290592
RefSeq - XM_015290593
RefSeq - XM_015290594
RefSeq - XM_015290586
RefSeq - XM_015290587
RefSeq - XM_015290588
RefSeq - XM_015290589
swissprot - A0A1D5PWR7
swissprot - A0A1D5PQF5
swissprot - A0A1D5PMN5
swissprot - A0A1D5NYH4
swissprot - A0A1D5PY27
Ensembl - ENSGALG00000031129
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hmcn1ENSDARG00000016936Danio rerio
 HMCN1ENSG00000143341Homo sapiens
 Hmcn1ENSMUSG00000066842Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
OBSCN / obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF / Q5VST9*ENSGALG0000003253417
IGSF10 / immunoglobulin superfamily member 10 / Q3V1M1* / Q6WRI0*ENSGALG000000442939
MXRA5 / matrix remodeling associated 5 / Q9NR99*ENSGALG000000166359
ENSGALG000000090898
ENSGALG000000325507
OBSL1 / obscurin like 1 / D3YYU8* / O75147* / Obscurin-like protein 1 *ENSGALG000000112427
MYPN / myopalladin / Q5DTJ9* / Q86TC9*ENSGALG000000039254
ENSGALG000000318262
PALLD / palladin, cytoskeletal associated protein / Q8WX93* / Q9ET54* / Palladin *ENSGALG000000096502
ENSGALG000000308941
ENSGALG000000348920


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR000884  Thrombospondin type-1 (TSP1) repeat
 IPR001881  EGF-like calcium-binding domain
 IPR002035  von Willebrand factor, type A
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR006605  G2 nidogen/fibulin G2F
 IPR007110  Immunoglobulin-like domain
 IPR009017  Green fluorescent protein
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR013098  Immunoglobulin I-set
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR018097  EGF-like calcium-binding, conserved site
 IPR026823  Complement Clr-like EGF domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005938 cell cortex IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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