ENSMUSG00000066842


Mus musculus

Features
Gene ID: ENSMUSG00000066842
  
Biological name :Hmcn1
  
Synonyms : D3YXG0 / Hemicentin-1 / Hmcn1
  
Possible biological names infered from orthology : Q96RW7
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: G1
Gene start: 150562524
Gene end: 150993435
  
Corresponding Affymetrix probe sets: 10358490 (MoGene1.0st)   10358513 (MoGene1.0st)   10358515 (MoGene1.0st)   10358517 (MoGene1.0st)   10358519 (MoGene1.0st)   10358521 (MoGene1.0st)   10358523 (MoGene1.0st)   10358525 (MoGene1.0st)   10358527 (MoGene1.0st)   10358529 (MoGene1.0st)   10358531 (MoGene1.0st)   10358533 (MoGene1.0st)   10358535 (MoGene1.0st)   10358537 (MoGene1.0st)   10358539 (MoGene1.0st)   10358541 (MoGene1.0st)   10358543 (MoGene1.0st)   10358545 (MoGene1.0st)   10358547 (MoGene1.0st)   10358549 (MoGene1.0st)   10358551 (MoGene1.0st)   10358553 (MoGene1.0st)   10358555 (MoGene1.0st)   10358557 (MoGene1.0st)   10358559 (MoGene1.0st)   10358561 (MoGene1.0st)   10358563 (MoGene1.0st)   10358565 (MoGene1.0st)   10358567 (MoGene1.0st)   10358569 (MoGene1.0st)   10358571 (MoGene1.0st)   10358573 (MoGene1.0st)   10358575 (MoGene1.0st)   10358577 (MoGene1.0st)   10358579 (MoGene1.0st)   10358581 (MoGene1.0st)   10358583 (MoGene1.0st)   10358585 (MoGene1.0st)   10358587 (MoGene1.0st)   10358589 (MoGene1.0st)   10358591 (MoGene1.0st)   10358593 (MoGene1.0st)   10358595 (MoGene1.0st)   10358597 (MoGene1.0st)   10358599 (MoGene1.0st)   10358601 (MoGene1.0st)   10358603 (MoGene1.0st)   10358605 (MoGene1.0st)   10358607 (MoGene1.0st)   10358609 (MoGene1.0st)   10358611 (MoGene1.0st)   10358613 (MoGene1.0st)   10358615 (MoGene1.0st)   10358617 (MoGene1.0st)   10358619 (MoGene1.0st)   10358621 (MoGene1.0st)   10358623 (MoGene1.0st)   10358625 (MoGene1.0st)   10358627 (MoGene1.0st)   10358629 (MoGene1.0st)   10358631 (MoGene1.0st)   10358633 (MoGene1.0st)   10358635 (MoGene1.0st)   10358637 (MoGene1.0st)   10358648 (MoGene1.0st)   10358650 (MoGene1.0st)   10358652 (MoGene1.0st)   10358654 (MoGene1.0st)   10358656 (MoGene1.0st)   10358658 (MoGene1.0st)   10358660 (MoGene1.0st)   10358662 (MoGene1.0st)   10358664 (MoGene1.0st)   10358666 (MoGene1.0st)   10358668 (MoGene1.0st)   10358670 (MoGene1.0st)   10358672 (MoGene1.0st)   1438532_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000134985
Ensembl peptide - ENSMUSP00000074340
Ensembl peptide - ENSMUSP00000121500
NCBI entrez gene - 545370     See in Manteia.
MGI - MGI:2685047
RefSeq - XM_006529757
RefSeq - XM_011248051
RefSeq - NM_001024720
RefSeq - XM_006529758
RefSeq Peptide - NP_001019891
swissprot - H3BJH2
swissprot - D3YXG0
Ensembl - ENSMUSG00000066842
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hmcn1ENSDARG00000016936Danio rerio
 HMCN1ENSGALG00000031129Gallus gallus
 HMCN1ENSG00000143341Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Hmcn2 / A2AJ76 / Hemicentin-2 / Q8NDA2*ENSMUSG0000005563239
Ttn / titin / A2ASS6 / Q8WZ42*ENSMUSG0000005174719
Obscn / obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF / Q5VST9*ENSMUSG0000006146218
Igsf10 / Q3V1M1 / Immunoglobulin superfamily member 10 / Q6WRI0*ENSMUSG000000363349
Obsl1 / D3YYU8 / Obscurin-like protein 1 / O75147* / obscurin like 1*ENSMUSG000000262116
Palld / Q9ET54 / Palladin / Q8WX93* / palladin, cytoskeletal associated protein*ENSMUSG000000580564
Mypn / Q5DTJ9 / Myopalladin / Q86TC9*ENSMUSG000000200674
Myot / Q9JIF9 / myotilin / Q9UBF9*ENSMUSG000000244712


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR000884  Thrombospondin type-1 (TSP1) repeat
 IPR001881  EGF-like calcium-binding domain
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR006605  G2 nidogen/fibulin G2F
 IPR007110  Immunoglobulin-like domain
 IPR009017  Green fluorescent protein
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR013098  Immunoglobulin I-set
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR018097  EGF-like calcium-binding, conserved site
 IPR026823  Complement Clr-like EGF domain
 IPR036179  Immunoglobulin-like domain superfamily
 IPR036383  Thrombospondin type-1 (TSP1) repeat superfamily
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005604 basement membrane IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005938 cell cortex IDA
 cellular_componentGO:0030054 cell junction IDA
 cellular_componentGO:0032154 cleavage furrow IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr