ENSGALG00000031635


Gallus gallus

Features
Gene ID: ENSGALG00000031635
  
Biological name :VPS41
  
Synonyms : vacuolar protein sorting-associated protein 41 homolog / VPS41
  
Possible biological names infered from orthology : P49754 / Q5KU39 / VPS41, HOPS complex subunit
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 49443503
Gene end: 49552632
  
Corresponding Affymetrix probe sets: Gga.1439.1.S1_at (Chicken Array)   Gga.1439.1.S1_s_at (Chicken Array)   Gga.19774.1.A1_at (Chicken Array)   Gga.19774.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051124
Ensembl peptide - ENSGALP00000058363
NCBI entrez gene - 420762     See in Manteia.
RefSeq - NM_001012859
RefSeq - XM_015281554
RefSeq - XM_015281555
RefSeq Peptide - NP_001012877
swissprot - A0A1D5PZF2
swissprot - A0A1D5PEC3
Ensembl - ENSGALG00000031635
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps41ENSDARG00000063573Danio rerio
 VPS41ENSG00000006715Homo sapiens
 Vps41ENSMUSG00000041236Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR001841  Zinc finger, RING-type
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016902  Vacuolar protein sorting-associated protein 41
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0034058 endosomal vesicle fusion IEA
 biological_processGO:0046907 intracellular transport IEA
 biological_processGO:1902774 late endosome to lysosome transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 cellular_componentGO:0030123 AP-3 adaptor complex IEA
 cellular_componentGO:0030136 clathrin-coated vesicle IEA
 cellular_componentGO:0030897 HOPS complex IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0071439 clathrin complex IEA
 molecular_functionGO:0008017 microtubule binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr