Manteia

ENSGALG00000031918

Gallus gallus

Features

Gene ID:	ENSGALG00000031918

Biological name :	RAD51D

Synonyms :	RAD51D / RAD51 paralog D

Possible biological names infered from orthology :	O55230 / O75771

Species:	Gallus gallus

Chr. number:	19
Strand:	1
Band:
Gene start:	4447460
Gene end:	4451549

Corresponding Affymetrix probe sets:	Gga.9680.1.S1_a_at (Chicken Array) Gga.9680.1.S1_x_at (Chicken Array) Gga.9680.3.S1_a_at (Chicken Array)

Cross references:	Ensembl peptide - ENSGALP00000049100 NCBI entrez gene - 417528 See in Manteia. RefSeq - NM_001198646 RefSeq - XM_015295720 RefSeq - XM_015295721 RefSeq Peptide - NP_001185575 swissprot - A0A1D5P8Q1 Ensembl - ENSGALG00000031918

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
RAD51C / RAD51 paralog C / O43502* / Q924H5* / DNA repair 3 *	ENSGALG00000040380	23
RAD51B / RAD51 paralog B / O15315* / O35719* / DNA repair 2 *	ENSGALG00000009491	21
XRCC3 / X-ray repair cross complementing 3 / O43542* / Q9CXE6* / X-ray repair complementing defective repair in Chinese hamster cells 3*	ENSGALG00000011533	18

Protein motifs (from Interpro)

Interpro ID	Name
IPR003593	AAA+ ATPase domain
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0000723	telomere maintenance	IEA
biological_process	GO:0000724	double-strand break repair via homologous recombination	IEA
biological_process	GO:0006281	DNA repair	IEA
biological_process	GO:0006289	nucleotide-excision repair	IEA
biological_process	GO:0006974	cellular response to DNA damage stimulus	IEA
biological_process	GO:0036297	interstrand cross-link repair	IEA
biological_process	GO:0042148	strand invasion	IEA
biological_process	GO:0051276	chromosome organization	IEA
biological_process	GO:0051726	regulation of cell cycle	IEA
cellular_component	GO:0000781	chromosome, telomeric region	IEA
cellular_component	GO:0000784	nuclear chromosome, telomeric region	IEA
cellular_component	GO:0005634	nucleus	IEA
cellular_component	GO:0005657	replication fork	IEA
cellular_component	GO:0005737	cytoplasm	IEA
cellular_component	GO:0005813	centrosome	IEA
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex	IEA
molecular_function	GO:0000400	four-way junction DNA binding	IEA
molecular_function	GO:0003677	DNA binding	IEA
molecular_function	GO:0003697	single-stranded DNA binding	IEA
molecular_function	GO:0005524	ATP binding	IEA
molecular_function	GO:0008094	DNA-dependent ATPase activity	IEA
molecular_function	GO:0043015	gamma-tubulin binding	IEA

Pathways (from Reactome)

Pathway description

HDR through Homologous Recombination (HRR)

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID	Name	Interaction type
ENSGALG00000026865	XRCC2 / X-ray repair cross complementing 2 / O43543* / Q9CX47* / X-ray repair complementing defective repair in Chinese hamster cells 2*	/ complex / reaction
ENSGALG00000040380	RAD51C / RAD51 paralog C / O43502* / Q924H5* / DNA repair 3 *	/ complex / reaction
ENSGALG00000017290	RAD51AP1 / RAD51 associated protein 1 / Q96B01* / RAD51-associated protein 1 isoform 2 *	/ reaction

0 s.

External programs and data are copyrighted by and are the property of their respective authors. The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation
		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr