ENSGALG00000032282


Gallus gallus

Features
Gene ID: ENSGALG00000032282
  
Biological name :CALB1
  
Synonyms : CALB1 / Calbindin / P04354
  
Possible biological names infered from orthology : calbindin 1 / P05937 / P12658
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 124959171
Gene end: 124977043
  
Corresponding Affymetrix probe sets: Gga.10903.1.S1_at (Chicken Array)   Gga.3286.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056213
NCBI entrez gene - 396519     See in Manteia.
RefSeq - NM_205513
RefSeq Peptide - NP_990844
swissprot - P04354
Ensembl - ENSGALG00000032282
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 calb1ENSDARG00000031598Danio rerio
 CALB1ENSG00000104327Homo sapiens
 Calb1ENSMUSG00000028222Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CALB2 / P07090 / Calretinin / P22676* / Q08331* / calbindin 2*ENSGALG0000002690359
SCGN / secretagogin, EF-hand calcium binding protein / O76038* / Q91WD9* / Secretagogin *ENSGALG0000001359838


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site
 IPR029634  Calbindin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006816 calcium ion transport TAS
 biological_processGO:0006874 cellular calcium ion homeostasis NAS
 biological_processGO:0007614 short-term memory IEA
 biological_processGO:0007616 long-term memory IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0010842 retina layer formation IEA
 biological_processGO:0019233 sensory perception of pain NAS
 biological_processGO:0035502 metanephric part of ureteric bud development IEA
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IBA
 biological_processGO:0055074 calcium ion homeostasis IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0071310 cellular response to organic substance IEA
 biological_processGO:0072205 metanephric collecting duct development IEA
 biological_processGO:0072221 metanephric distal convoluted tubule development IEA
 biological_processGO:0072286 metanephric connecting tubule development IEA
 biological_processGO:1900271 regulation of long-term synaptic potentiation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0012506 vesicle membrane NAS
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0044297 cell body IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IDA
 molecular_functionGO:0005499 vitamin D binding IEA
 molecular_functionGO:0005509 calcium ion binding IBA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr