ENSGALG00000034802


Gallus gallus

Features
Gene ID: ENSGALG00000034802
  
Biological name :SETD3
  
Synonyms : histone-lysine N-methyltransferase setd3 / SETD3
  
Possible biological names infered from orthology : Q86TU7 / Q91WC0 / SET domain containing 3
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 48029089
Gene end: 48083082
  
Corresponding Affymetrix probe sets: Gga.16994.1.S1_at (Chicken Array)   Gga.2307.1.S1_at (Chicken Array)   GgaAffx.11468.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050207
Ensembl peptide - ENSGALP00000064644
Ensembl peptide - ENSGALP00000062671
Ensembl peptide - ENSGALP00000061193
NCBI entrez gene - 423445     See in Manteia.
RefSeq - XM_015287463
RefSeq - XM_015287466
RefSeq - XM_015287465
RefSeq - XM_015287464
RefSeq - NM_001006486
RefSeq Peptide - NP_001006486
swissprot - A0A1L1S0J7
swissprot - A0A1D5PBS7
swissprot - A0A1L1RQW2
swissprot - A0A1L1RV17
Ensembl - ENSGALG00000034802
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 setd3ENSDARG00000016513Danio rerio
 SETD3ENSG00000183576Homo sapiens
 Setd3ENSMUSG00000056770Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SETD4 / SET domain-containing protein 4 / Q9NVD3* / SET domain containing 4*ENSGALG0000001602414


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR015353  Rubisco LSMT, substrate-binding domain
 IPR025785  Histone-lysine N-methyltransferase, SETD3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010452 histone H3-K36 methylation IEA
 biological_processGO:0018022 peptidyl-lysine methylation IEA
 biological_processGO:0018023 peptidyl-lysine trimethylation IEA
 biological_processGO:0018026 peptidyl-lysine monomethylation IEA
 biological_processGO:0018027 peptidyl-lysine dimethylation IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051149 positive regulation of muscle cell differentiation IEA
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0018024 histone-lysine N-methyltransferase activity IEA
 molecular_functionGO:0042800 histone methyltransferase activity (H3-K4 specific) IEA
 molecular_functionGO:0046975 histone methyltransferase activity (H3-K36 specific) IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr