ENSDARG00000016513


Danio rerio

Features
Gene ID: ENSDARG00000016513
  
Biological name :setd3
  
Synonyms : setd3 / SET domain containing 3
  
Possible biological names infered from orthology : Q86TU7 / Q91WC0
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 18031304
Gene end: 18070787
  
Corresponding Affymetrix probe sets: Dr.11469.1.A1_a_at (Zebrafish Array)   Dr.11469.2.A1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000005500
Ensembl peptide - ENSDARP00000110046
NCBI entrez gene - 337193     See in Manteia.
RefSeq - NM_200054
RefSeq Peptide - NP_956348
swissprot - F1RBB3
swissprot - E7FDI9
ZFIN ID - ZDB-GENE-030131-9137
Ensembl - ENSDARG00000016513
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SETD3ENSGALG00000034802Gallus gallus
 SETD3ENSG00000183576Homo sapiens
 Setd3ENSMUSG00000056770Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
setd4 / SET domain containing 4 / Q9NVD3*ENSDARG0000003659216


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR015353  Rubisco LSMT, substrate-binding domain
 IPR025785  Histone-lysine N-methyltransferase, SETD3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010452 histone H3-K36 methylation IEA
 biological_processGO:0018022 peptidyl-lysine methylation IEA
 biological_processGO:0018023 peptidyl-lysine trimethylation IEA
 biological_processGO:0018026 peptidyl-lysine monomethylation IEA
 biological_processGO:0018027 peptidyl-lysine dimethylation IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0018024 histone-lysine N-methyltransferase activity IEA
 molecular_functionGO:0046975 histone methyltransferase activity (H3-K36 specific) IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr