ENSGALG00000038160


Gallus gallus

Features
Gene ID: ENSGALG00000038160
  
Biological name :POLR1A
  
Synonyms : POLR1A / RNA polymerase I subunit A
  
Possible biological names infered from orthology : DNA-directed RNA polymerase I subunit RPA1 / O35134 / O95602
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 86019611
Gene end: 86049401
  
Corresponding Affymetrix probe sets: Gga.10486.1.S1_s_at (Chicken Array)   Gga.18997.1.S1_at (Chicken Array)   GgaAffx.24766.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045283
NCBI entrez gene - 422910     See in Manteia.
RefSeq - XM_015285989
swissprot - A0A1D5NY28
Ensembl - ENSGALG00000038160
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr1aENSDARG00000098375Danio rerio
 O95602ENSG00000068654Homo sapiens
 O35134ENSMUSG00000049553Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000722  RNA polymerase, alpha subunit
 IPR006592  RNA polymerase, N-terminal
 IPR007066  RNA polymerase Rpb1, domain 3
 IPR007080  RNA polymerase Rpb1, domain 1
 IPR007081  RNA polymerase Rpb1, domain 5
 IPR007083  RNA polymerase Rpb1, domain 4
 IPR015699  DNA-directed RNA pol I, largest subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:1904750 negative regulation of protein localization to nucleolus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IEA
 molecular_functionGO:0001054 RNA polymerase I activity IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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