ENSGALG00000038222


Gallus gallus

Features
Gene ID: ENSGALG00000038222
  
Biological name :BPTF
  
Synonyms : BPTF / bromodomain PHD finger transcription factor
  
Possible biological names infered from orthology : Q12830
  
Species: Gallus gallus
  
Chr. number: 18
Strand: -1
Band:
Gene start: 7073216
Gene end: 7117413
  
Corresponding Affymetrix probe sets: Gga.17310.1.S1_at (Chicken Array)   Gga.7111.1.S1_s_at (Chicken Array)   Gga.7111.2.S1_s_at (Chicken Array)   GgaAffx.2267.1.S1_s_at (Chicken Array)   GgaAffx.25909.3.S1_at (Chicken Array)   GgaAffx.25909.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043786
Ensembl peptide - ENSGALP00000062625
Ensembl peptide - ENSGALP00000058529
Ensembl peptide - ENSGALP00000058348
Ensembl peptide - ENSGALP00000051098
Ensembl peptide - ENSGALP00000047936
Ensembl peptide - ENSGALP00000044689
Ensembl peptide - ENSGALP00000043831
NCBI entrez gene - 100858895     See in Manteia.
RefSeq - XM_015279971
RefSeq - XM_015279962
RefSeq - XM_015279963
RefSeq - XM_015279964
RefSeq - XM_015279965
RefSeq - XM_015279967
RefSeq - XM_015279968
RefSeq - XM_015279969
RefSeq - XM_015279970
RefSeq - XM_003642329
RefSeq - XM_004946205
RefSeq - XM_015279960
RefSeq - XM_015279961
swissprot - A0A1D5PZW2
swissprot - A0A1D5PZD7
swissprot - A0A1D5PE97
swissprot - A0A1D5P5G8
swissprot - A0A1D5NWF0
swissprot - A0A1D5NU22
swissprot - A0A1D5NTX9
swissprot - A0A1L1RUX9
Ensembl - ENSGALG00000038222
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bptfENSDARG00000077361Danio rerio
 BPTFENSG00000171634Homo sapiens
 BptfENSMUSG00000040481Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CECR2 / cat eye syndrome critical region protein 2 / Q9BXF3* / E9Q2Z1* / Cat eye syndrome critical region * / CECR2, histone acetyl-lysine reader*ENSGALG000000130348
ENSGALG000000112787
KAT2A / lysine acetyltransferase 2A / Q92830* / Q9JHD2* / K(lysine) acetyltransferase 2A*ENSGALG000000033697


Protein motifs (from Interpro)
Interpro ID Name
 IPR001487  Bromodomain
 IPR001965  Zinc finger, PHD-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR018359  Bromodomain, conserved site
 IPR018501  DDT domain
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR028941  WHIM2 domain
 IPR028942  WHIM1 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001892 embryonic placenta development IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007492 endoderm development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016589 NURF complex IEA
 cellular_componentGO:0048188 Set1C/COMPASS complex IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0035064 methylated histone binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr