ENSGALG00000040212


Gallus gallus

Features
Gene ID: ENSGALG00000040212
  
Biological name :FYCO1
  
Synonyms : FYCO1 / FYVE and coiled-coil domain containing 1
  
Possible biological names infered from orthology : FYVE and coiled-coil domain-containing protein 1 / Q8VDC1 / Q9BQS8
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 42914367
Gene end: 42938103
  
Corresponding Affymetrix probe sets: GgaAffx.7469.1.S1_at (Chicken Array)   GgaAffx.7470.1.S1_at (Chicken Array)   GgaAffx.7491.1.S1_at (Chicken Array)   GgaAffx.7494.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044662
NCBI entrez gene - 428453     See in Manteia.
RefSeq - XM_015281584
RefSeq - NM_001045839
RefSeq - XM_015281582
RefSeq - XM_015281583
RefSeq - XM_015281577
RefSeq - XM_015281578
RefSeq - XM_015281579
RefSeq - XM_015281580
RefSeq - XM_015281581
RefSeq Peptide - NP_001039304
swissprot - A0A1D5NWC3
Ensembl - ENSGALG00000040212
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fyco1aENSDARG00000104500Danio rerio
 fyco1bENSDARG00000078022Danio rerio
 FYCO1ENSG00000163820Homo sapiens
 Fyco1ENSMUSG00000025241Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EEA1 / early endosome antigen 1 / Q15075* / Q8BL66*ENSGALG0000001128015
RUFY4 / RUN and FYVE domain containing 4 / Q3TYX8* / Q6ZNE9* / RUN and FYVE domain-containing protein 4 *ENSGALG0000002971810


Protein motifs (from Interpro)
Interpro ID Name
 IPR000306  FYVE zinc finger
 IPR004012  RUN domain
 IPR009038  GOLD domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017455  Zinc finger, FYVE-related


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0072383 plus-end-directed vesicle transport along microtubule IEA
 biological_processGO:1901098 positive regulation of autophagosome maturation IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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