ENSGALG00000040620


Gallus gallus

Features
Gene ID: ENSGALG00000040620
  
Biological name :LSAMP
  
Synonyms : Limbic system-associated membrane protein / LSAMP / Q98919
  
Possible biological names infered from orthology : Mus musculus limbic system-associated membrane protein (Lsamp), transcript variant 2, mRNA. / Q13449 / Q8BLK3
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 81944958
Gene end: 82236106
  
Corresponding Affymetrix probe sets: Gga.3270.1.S1_at (Chicken Array)   Gga.4154.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058018
Ensembl peptide - ENSGALP00000063211
Ensembl peptide - ENSGALP00000055652
NCBI entrez gene - 395687     See in Manteia.
RefSeq - NM_204874
RefSeq Peptide - NP_990205
swissprot - A0A1D5PRX3
swissprot - O02869
swissprot - Q98919
Ensembl - ENSGALG00000040620
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSAMPENSDARG00000103069Danio rerio
 LSAMPENSG00000185565Homo sapiens
 LsampENSMUSG00000061080Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
OPCML / opioid-binding protein/cell adhesion molecule homolog precursor / Q14982* / opioid binding protein/cell adhesion molecule like*ENSGALG0000000144254
NEGR1 / Q9W6V2 / Neuronal growth regulator 1 / Q7Z3B1* / Q80Z24*ENSGALG0000001135052
NTM / protein CEPU-1 precursor / Q99PJ0* / Q9P121* / neurotrimin* / Mus musculus neurotrimin (Ntm), transcript variant 7, mRNA.*ENSGALG0000000143751


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0035641 locomotory exploration behavior IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031225 anchored component of membrane IEA


Pathways (from Reactome)
Pathway description
Post-translational modification: synthesis of GPI-anchored proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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