ENSGALG00000042201


Gallus gallus

Features
Gene ID: ENSGALG00000042201
  
Biological name :TP53BP1
  
Synonyms : TP53BP1 / tumor protein p53 binding protein 1
  
Possible biological names infered from orthology : P70399 / Q12888 / TP53-binding protein 1 / Trp53bp1
  
Species: Gallus gallus
  
Chr. number: 10
Strand: 1
Band:
Gene start: 20283723
Gene end: 20314616
  
Corresponding Affymetrix probe sets: GgaAffx.5368.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047256
NCBI entrez gene - 415589     See in Manteia.
RefSeq - XM_004943995
RefSeq - XM_413957
RefSeq - XM_015292141
RefSeq - XM_015292143
swissprot - A0A1D5P3K1
Ensembl - ENSGALG00000042201
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tp53bp1ENSDARG00000079000Danio rerio
 Q12888ENSG00000067369Homo sapiens
 P70399ENSMUSG00000043909Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001357  BRCT domain
 IPR014722  Ribosomal protein L2, domain 2
 IPR015125  Tumour suppressor p53-binding protein-1 Tudor domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006303 double-strand break repair via nonhomologous end joining IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0045830 positive regulation of isotype switching IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:2000042 negative regulation of double-strand break repair via homologous recombination IEA
 cellular_componentGO:0000776 kinetochore IEA
 cellular_componentGO:0000781 chromosome, telomeric region IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005657 replication fork IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0035861 site of double-strand break IEA
 cellular_componentGO:1990391 DNA repair complex IEA
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding IEA
 molecular_functionGO:0002039 p53 binding IEA
 molecular_functionGO:0003684 damaged DNA binding IEA
 molecular_functionGO:0035064 methylated histone binding IEA
 molecular_functionGO:0042162 telomeric DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0061649 ubiquitin modification-dependent histone binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of transcription factors
Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Nonhomologous End-Joining (NHEJ)
Processing of DNA double-strand break ends
G2/M DNA damage checkpoint


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr