ENSGALG00000043223


Gallus gallus

Features
Gene ID: ENSGALG00000043223
  
Biological name :COL26A1
  
Synonyms : COL26A1 / collagen type XXVI alpha 1 chain
  
Possible biological names infered from orthology : Mus musculus collagen, type XXVI, alpha 1 (Col26a1), transcript variant 2, mRNA. / Q91VF6 / Q96A83
  
Species: Gallus gallus
  
Chr. number: 19
Strand: 1
Band:
Gene start: 3498587
Gene end: 3653964
  
Corresponding Affymetrix probe sets: Gga.14552.1.S1_s_at (Chicken Array)   GgaAffx.1147.1.S1_at (Chicken Array)   GgaAffx.25026.1.S1_s_at (Chicken Array)   GgaAffx.25026.3.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043967
Ensembl peptide - ENSGALP00000052789
Ensembl peptide - ENSGALP00000051503
Ensembl peptide - ENSGALP00000049498
Ensembl peptide - ENSGALP00000044288
NCBI entrez gene - 417504     See in Manteia.
RefSeq - XM_015295993
RefSeq - XM_015295987
RefSeq - XM_015295988
RefSeq - XM_015295989
RefSeq - XM_015295990
RefSeq - XM_015295991
RefSeq - XM_004946472
RefSeq - XM_015295986
swissprot - A0A1D5PFE0
swissprot - A0A1D5P9U0
swissprot - A0A1D5NVB5
swissprot - A0A1D5NUF0
swissprot - A0A1D5PJ01
Ensembl - ENSGALG00000043223
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q96A83ENSG00000160963Homo sapiens
 Q91VF6ENSMUSG00000004415Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EMILIN2 / elastin microfibril interfacer 2 / Q8K482* / Q9BXX0* / Mus musculus elastin microfibril interfacer 2 (Emilin2), transcript variant 3, mRNA.*ENSGALG0000003299716
Q99K41* / Q9Y6C2* / EMILIN1* / elastin microfibril interfacer 1*ENSGALG000000331876
EMILIN3 / elastin microfibril interfacer 3 / P59900* / Q9NT22*ENSGALG000000300126


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat
 IPR011489  EMI domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010811 positive regulation of cell-substrate adhesion IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr