ENSMUSG00000004415


Mus musculus

Features
Gene ID: ENSMUSG00000004415
  
Biological name :Col26a1
  
Synonyms : Col26a1 / Mus musculus collagen, type XXVI, alpha 1 (Col26a1), transcript variant 2, mRNA. / Q91VF6
  
Possible biological names infered from orthology : collagen type XXVI alpha 1 chain / Q96A83
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: G2
Gene start: 136741759
Gene end: 136883209
  
Corresponding Affymetrix probe sets: 10534640 (MoGene1.0st)   1425310_a_at (Mouse Genome 430 2.0 Array)   1458189_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000052095
Ensembl peptide - ENSMUSP00000106732
NCBI entrez gene - 140709     See in Manteia.
MGI - MGI:2155345
RefSeq - XM_011240858
RefSeq - NM_001346699
RefSeq - NM_024474
RefSeq - XM_006504365
RefSeq - XM_011240856
RefSeq - XM_011240857
RefSeq - XM_006504361
RefSeq - XM_006504362
RefSeq - XM_006504363
RefSeq - XM_006504364
RefSeq Peptide - NP_077794
RefSeq Peptide - NP_001333628
swissprot - Q91VF6
Ensembl - ENSMUSG00000004415
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL26A1ENSGALG00000043223Gallus gallus
 Q96A83ENSG00000160963Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Emid1 / Q91VF5 / EMI domain-containing protein 1 / Q96A84* / EMI domain containing 1*ENSMUSG0000003416440
Q99K41 / Emilin1 / Q9Y6C2* / elastin microfibril interfacer 1*ENSMUSG0000002916325
Q8K482 / Emilin2 / Mus musculus elastin microfibril interfacer 2 (Emilin2), transcript variant 3, mRNA. / Q9BXX0* / elastin microfibril interfacer 2*ENSMUSG0000002405319
P59900 / Emilin3 / Q9NT22* / elastin microfibril interfacer 3*ENSMUSG0000005070017


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat
 IPR011489  EMI domain
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010811 positive regulation of cell-substrate adhesion IDA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005794 Golgi apparatus IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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