ENSMUSG00000001158


Mus musculus

Features
Gene ID: ENSMUSG00000001158
  
Biological name :Snrnp27
  
Synonyms : Q8K194 / Snrnp27 / U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
  
Possible biological names infered from orthology : Q8WVK2 / small nuclear ribonucleoprotein U4/U6.U5 subunit 27
  
Species: Mus musculus
  
Chr. number: 6
Strand: -1
Band: D1
Gene start: 86675151
Gene end: 86684522
  
Corresponding Affymetrix probe sets: 10545932 (MoGene1.0st)   10338205 (MoGene1.0st)   10339337 (MoGene1.0st)   10339446 (MoGene1.0st)   10339480 (MoGene1.0st)   10339500 (MoGene1.0st)   10340588 (MoGene1.0st)   10342343 (MoGene1.0st)   10343594 (MoGene1.0st)   10338369 (MoGene1.0st)   10340592 (MoGene1.0st)   10340889 (MoGene1.0st)   10341656 (MoGene1.0st)   10342291 (MoGene1.0st)   10344423 (MoGene1.0st)   1415714_a_at (Mouse Genome 430 2.0 Array)   1460697_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000001186
Ensembl peptide - ENSMUSP00000109313
NCBI entrez gene - 66618     See in Manteia.
MGI - MGI:1913868
RefSeq - NM_025665
RefSeq Peptide - NP_079941
swissprot - Q8K194
Ensembl - ENSMUSG00000001158
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q6DH74ENSDARG00000035625Danio rerio
 SNRNP27ENSGALG00000013883Gallus gallus
 Q8WVK2ENSG00000124380Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013957  U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000467 abnormal esophagus morphology "malformation of the part of the digestive canal through which food passes from the pharynx to the stomach" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:tc]
Show

Allelic Composition: Smurf2tm1b(EUCOMM)Wtsi/Smurf2tm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Smurf2tm1b(EUCOMM)Wtsi/H

 MP:0005103 abnormal retinal pigmentation "anomalous coloring of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Smurf2tm1b(EUCOMM)Wtsi/Smurf2tm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Smurf2tm1b(EUCOMM)Wtsi/H

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Smurf2tm1b(EUCOMM)Wtsi/Smurf2tm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Smurf2tm1b(EUCOMM)Wtsi/H

 MP:0013292 embryonic lethality prior to organogenesis "death prior to the completion of embryo turning (Mus: E9-9.5)" [MGI:smb]
Show

Allelic Composition: Smurf2tm1b(EUCOMM)Wtsi/Smurf2tm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Smurf2tm1b(EUCOMM)Wtsi/H

 MP:0013293 embryonic lethality prior to tooth bud stage "death prior to the appearance of tooth buds (Mus: E12-E12.5)" [MGI:smb]
Show

Allelic Composition: Smurf2tm1b(EUCOMM)Wtsi/Smurf2tm1b(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Smurf2tm1b(EUCOMM)Wtsi/H

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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