ENSMUSG00000004897


Mus musculus

Features
Gene ID: ENSMUSG00000004897
  
Biological name :Hdgf
  
Synonyms : Hdgf / Hepatoma-derived growth factor / P51859
  
Possible biological names infered from orthology : heparin binding growth factor / P51858
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: F1
Gene start: 87906321
Gene end: 87916132
  
Corresponding Affymetrix probe sets: 10493086 (MoGene1.0st)   1415888_at (Mouse Genome 430 2.0 Array)   1419964_s_at (Mouse Genome 430 2.0 Array)   1449681_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000123832
Ensembl peptide - ENSMUSP00000124803
Ensembl peptide - ENSMUSP00000005017
NCBI entrez gene - 15191     See in Manteia.
MGI - MGI:1194494
RefSeq - XM_006501027
RefSeq - XM_006501028
RefSeq - XM_006501029
RefSeq - NM_008231
RefSeq Peptide - NP_032257
swissprot - P51859
swissprot - E0CXA0
swissprot - E0CYW7
Ensembl - ENSMUSG00000004897
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000032847Gallus gallus
 HDGFENSG00000143321Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Psip1 / Q99JF8 / Mus musculus PC4 and SFRS1 interacting protein 1 (Psip1), transcript variant 3, mRNA. / O75475* / PC4 and SFRS1 interacting protein 1*ENSMUSG0000002848446
Hdgfl2 / Q3UMU9 / Mus musculus HDGF like 2 (Hdgfl2), transcript variant 4, mRNA. / Q7Z4V5* / HDGF like 2*ENSMUSG0000000283343
Hdgfl1 / Q5TGJ6* / HDGF like 1*ENSMUSG0000004583542
Hdgfl3 / Q9JMG7 / Hepatoma-derived growth factor-related protein 3 / Q9Y3E1* / HDGF like 3*ENSMUSG0000002510439


Protein motifs (from Interpro)
Interpro ID Name
 IPR000313  PWWP domain
 IPR035496  HDGF-related, PWWP domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0009987 cellular process IDA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0001222 transcription corepressor binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008083 growth factor activity ISO
 molecular_functionGO:0008201 heparin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002757 reduced vertical activity "lesser than average time spent jumping or rearing" [J:82829, pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
Show

Allelic Composition: Polr2aTn(pb-CAG-GCaMP5g,-tdTomato)Tvrd/Polr2aTn(pb-CAG-GCaMP5g,-tdTomato)Tvrd
Genetic Background: involves: 129S6/SvEvTac * C57BL/6J * C57BL/6NCr

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr