ENSMUSG00000020076


Mus musculus

Features
Gene ID: ENSMUSG00000020076
  
Biological name :Ddx50
  
Synonyms : ATP-dependent RNA helicase DDX50 / Ddx50 / Q99MJ9
  
Possible biological names infered from orthology : DExD-box helicase 50 / Q9BQ39
  
Species: Mus musculus
  
Chr. number: 10
Strand: -1
Band: B4
Gene start: 62615895
Gene end: 62651218
  
Corresponding Affymetrix probe sets: 10369647 (MoGene1.0st)   1417875_at (Mouse Genome 430 2.0 Array)   1439082_at (Mouse Genome 430 2.0 Array)   1453852_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000020270
Ensembl peptide - ENSMUSP00000151469
NCBI entrez gene - 94213     See in Manteia.
MGI - MGI:2182303
RefSeq - XM_011243608
RefSeq - NM_053183
RefSeq - XM_006514345
RefSeq - XM_006514346
RefSeq Peptide - NP_444413
swissprot - A0A1W2P700
swissprot - Q99MJ9
Ensembl - ENSMUSG00000020076
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX50ENSG00000107625Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ddx21 / Q9JIK5 / Nucleolar RNA helicase 2 / Q9NR30* / DExD-box helicase 21*ENSMUSG0000002007558


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR012562  GUCT
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005886 plasma membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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