ENSMUSG00000020273


Mus musculus

Features
Gene ID: ENSMUSG00000020273
  
Biological name :Papolg
  
Synonyms : Papolg / poly(A) polymerase gamma / Q6PCL9
  
Possible biological names infered from orthology : Q9BWT3
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: A3.2
Gene start: 23862646
Gene end: 23895253
  
Corresponding Affymetrix probe sets: 10384737 (MoGene1.0st)   1427241_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000020513
Ensembl peptide - ENSMUSP00000099927
Ensembl peptide - ENSMUSP00000115518
NCBI entrez gene - 216578     See in Manteia.
MGI - MGI:2442119
RefSeq - NM_172555
RefSeq - XM_006514653
RefSeq Peptide - NP_766143
swissprot - F6THF3
swissprot - Q6PCL9
swissprot - Q8BY05
Ensembl - ENSMUSG00000020273
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 papolgENSDARG00000012141Danio rerio
 PAPOLGENSGALG00000007853Gallus gallus
 PAPOLGENSG00000115421Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Papola / Q61183 / Poly(A) polymerase alpha / P51003*ENSMUSG0000002111157
Papolb / poly(A) polymerase beta / Q9NRJ5*ENSMUSG0000007481750


Protein motifs (from Interpro)
Interpro ID Name
 IPR002934  Polymerase, nucleotidyl transferase domain
 IPR007010  Poly(A) polymerase, RNA-binding domain
 IPR007012  Poly(A) polymerase, central domain
 IPR011068  Nucleotidyltransferase, class I-like, C-terminal
 IPR014492  Poly(A) polymerase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0031123 RNA 3"-end processing IEA
 biological_processGO:0043631 RNA polyadenylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004652 polynucleotide adenylyltransferase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr