ENSMUSG00000021687


Mus musculus

Features
Gene ID: ENSMUSG00000021687
  
Biological name :Scamp1
  
Synonyms : Q8K021 / Scamp1 / secretory carrier membrane protein 1
  
Possible biological names infered from orthology : O15126
  
Species: Mus musculus
  
Chr. number: 13
Strand: -1
Band: C3
Gene start: 94201310
Gene end: 94285857
  
Corresponding Affymetrix probe sets: 10411156 (MoGene1.0st)   1426775_s_at (Mouse Genome 430 2.0 Array)   1453054_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000022197
Ensembl peptide - ENSMUSP00000120053
Ensembl peptide - ENSMUSP00000121039
Ensembl peptide - ENSMUSP00000123135
NCBI entrez gene - 107767     See in Manteia.
MGI - MGI:1349480
RefSeq - XM_006517515
RefSeq - NM_029153
RefSeq - XM_006517514
RefSeq Peptide - NP_083429
RefSeq Peptide - NP_001333538
swissprot - Q3TD71
swissprot - Q3TSA8
swissprot - Q8K021
swissprot - D3YTP4
Ensembl - ENSMUSG00000021687
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scamp1ENSDARG00000036911Danio rerio
 SCAMP1ENSGALG00000004425Gallus gallus
 O15126ENSG00000085365Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O35609 / Scamp3 / Secretory carrier-associated membrane protein 3 / O14828* / secretory carrier membrane protein 3*ENSMUSG0000002804954
Q9ERN0 / Scamp2 / secretory carrier membrane protein 2 / O15127*ENSMUSG0000004018852
Q9JKD3 / Scamp5 / Secretory carrier-associated membrane protein 5 / Q8TAC9* / secretory carrier membrane protein 5*ENSMUSG0000004072231
Q9JKV5 / Scamp4 / secretory carrier membrane protein 4 / Q969E2*ENSMUSG0000011394929


Protein motifs (from Interpro)
Interpro ID Name
 IPR007273  SCAMP


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006887 exocytosis IMP
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IEA
 cellular_componentGO:0008021 synaptic vesicle TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IDA
 cellular_componentGO:0030672 synaptic vesicle membrane IDA
 cellular_componentGO:0042589 zymogen granule membrane IDA
 cellular_componentGO:0045202 synapse IDA
 cellular_componentGO:0055038 recycling endosome membrane ISS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: S100a1tm1Jhh/S100a1+
Genetic Background: involves: 129S1/Sv * C57BL/6

 MP:0005621 abnormal cell physiology "aberration in the vital processes of the cell " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, hdene:Howard Dene , Mouse Genome Informatics Curator]
Show

Allelic Composition: S100a1tm1Jhh/S100a1+
Genetic Background: involves: 129S1/Sv * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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