ENSMUSG00000022517


Mus musculus

Features
Gene ID: ENSMUSG00000022517
  
Biological name :Mgrn1
  
Synonyms : Mgrn1 / Mus musculus mahogunin, ring finger 1 (Mgrn1), transcript variant 3, mRNA. / Q9D074
  
Possible biological names infered from orthology : mahogunin ring finger 1 / O60291
  
Species: Mus musculus
  
Chr. number: 16
Strand: 1
Band: A1
Gene start: 4886249
Gene end: 4938296
  
Corresponding Affymetrix probe sets: 10433311 (MoGene1.0st)   1431285_at (Mouse Genome 430 2.0 Array)   1445304_at (Mouse Genome 430 2.0 Array)   1454645_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000023159
Ensembl peptide - ENSMUSP00000068314
Ensembl peptide - ENSMUSP00000155034
Ensembl peptide - ENSMUSP00000155425
NCBI entrez gene - 17237     See in Manteia.
MGI - MGI:2447670
RefSeq - XM_017316887
RefSeq - NM_001252437
RefSeq - NM_001357061
RefSeq - NM_029657
RefSeq - XM_006521832
RefSeq - XM_006521834
RefSeq - XM_006521837
RefSeq Peptide - NP_001239366
RefSeq Peptide - NP_001343990
RefSeq Peptide - NP_001343991
RefSeq Peptide - NP_083933
swissprot - Q9D074
Ensembl - ENSMUSG00000022517
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mgrn1aENSDARG00000100072Danio rerio
 mgrn1bENSDARG00000004796Danio rerio
 MGRN1ENSGALG00000037492Gallus gallus
 MGRN1ENSG00000102858Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rnf157 / ring finger protein 157 / Q96PX1*ENSMUSG0000005294958


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IDA
 biological_processGO:0006513 protein monoubiquitination IMP
 biological_processGO:0008333 endosome to lysosome transport IMP
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0043951 negative regulation of cAMP-mediated signaling IDA
 biological_processGO:0045744 negative regulation of G-protein coupled receptor protein signaling pathway IDA
 biological_processGO:0045879 negative regulation of smoothened signaling pathway IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0005886 plasma membrane ISO
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IDA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000284 double outlet right ventricle "both the aorta and the pulmonary trunk originate from the right ventricle, usually in conjunction with a ventricular septal defect" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:67826]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0000644 dextrocardia "cardiac apex pointing to the right as opposed to the normal levocardia" [ava:Anna V. Anagnostopoulos, Mouse Genome Informatics Curator]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0000650 mesocardia "cardiac apex pointing to the middle as opposed to the normal levocardia" [ava:Anna V. Anagnostopoulos, Mouse Genome Informatics Curator]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0000747 muscle weakness "loss of muscle strength" [csmith:Cynthia L. Smith, Mouse Genome Informatics Curator]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

 MP:0001274 curly vibrissae "whiskers twisted into coils or spirals" [J:47620]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

 MP:0001706 abnormal left-right axis patterning "anomaly in the formation or development of the body or a specific organ of the body in relation to the left and right sides of the body or organ" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0001914 hemorrhage "loss of blood from the vascular compartment to the exterior or into nonvascular body space as a result of rupture or severance of the blood vessels" [Stedman s Medical Dictionary, 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0001935 reduced litter size "fewer live born pups in a litter compared to average" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

 MP:0002075 abnormal coat color "irregular or unusual pigmentation pattern of the hair in relation to control animals" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Fgfr1tm1Jpa/Fgfr1tm1.1Jpa,H2afvTg(Wnt1-cre)11Rth/0
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * CBA * ICR

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: C3H/HeJ-Mgrn1md-2J

Allelic Composition: Mgrn1md-4J/Mgrn1md-4J
Genetic Background: C3H/HeJ-Mgrn1md-4J

Allelic Composition: Mgrn1md-5J/Mgrn1md-5J
Genetic Background: C3H/HeJ

Allelic Composition: Mgrn1md-6J/Mgrn1md-6J
Genetic Background: C3H/HeJ-Mgrn1md-6J

 MP:0002080 prenatal lethality "death anytime between fertilization and E18.5" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Itgb1tm2Son/Itgb1tm2Son
Genetic Background: FVB.129P2-Itgb1tm2Son

 MP:0002083 premature death "death after 3 weeks of age, but before normal life span" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

 MP:0002652 thin myocardial wall "thinly developed cardiac muscle layers" [il:Ira Lu , Mouse Genome Informatics Curator, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0002654 spongiform encephalopathy "a neurodegenerative state characterized by the appearance of large vacuolated areas in the brain cells, resembling a sponge" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

 MP:0002766 situs inversus "lateral transposition of the viscera of the thorax and abdomen, sometimes incomplete" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0003178 left pulmonary isomerism "bilaterally symmetric left lung pattern (or altered asymmetric patterning of the lung)" [smb:Susan M Bello, Mouse Genome Informatics Curator, J:93051]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0003354 astrocytosis "a proliferation or spread of astrocytes in the area of a degenerative lesion or damaged tissue" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

 MP:0004158 right aortic arch "the aortic arch lies to the right of the trachea and esophagus; results from persistance of the entire right dorsal arch and involution of a segment of the left arch" [monikat:Monika Tomczuk, Mouse Genome Informatics Curator]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0005312 pericardial effusion "escape of fluid from blood vessels or lymphatics into the fibrous sac surrounding the heart" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0005409 darkened coat color "amount and distribution of yellow pigment (phaeomelanin) relative to black or brown pigment (eumelanin) is decreasesd when compared to wild-type agouti" [llw2:Linda Washburn , Mouse Genome Informatics Curator]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md/Mgrn1md
Genetic Background: C3H/HeJ-Mgrn1md/J

Allelic Composition: Mgrn1md-4J/Mgrn1md-4J
Genetic Background: C3H/HeJ-Mgrn1md-4J

Allelic Composition: Mgrn1md-5J/Mgrn1md-5J
Genetic Background: C3H/HeJ

Allelic Composition: Mgrn1md-6J/Mgrn1md-6J
Genetic Background: C3H/HeJ-Mgrn1md-6J

 MP:0006138 congestive heart failure "the heart is unable to adequately pump blood throughout the body" [ncbi:Matthew Mailman, NCBI request, smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0008025 brain vacuoles "the abnormal presence of cavities or fluid-filled vesicles in the soma of brain cells, often indicative of spongiosis or other pathological states" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

 MP:0010334 pleural effusion "accumulation of excess fluid in the pleural cavity" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0010402 ventricular septal defect "abnormal communications between the two lower chambers of the heart, including such defects in the perimembranous, inlet, outlet (infundibular), central muscular, marginal muscular, or apical muscular regions" [MESH:C14.240.400.560.540]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0010403 atrial septal defect "abnormal communications between the two upper chambers of the heart, including such defects in any or all of the ostium primum, ostium secundum, sinus venosus, and coronary sinus regions" [MESH:C14.240.400.560.375]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0010426 abnormal heart and great artery attachment "any anomaly in the in the position or pattern of the connection site of the heart to any of the great arteries, including the pulmonary artery and aorta" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0010436 abnormal coronary sinus morphology "any structural anomaly of the short trunk that recieves most of the cardiac veins carrying the blood from the myocardium and delivers it to the right atrium, with the sinoatrial connection occuring between the inferior vena cava and the atrioventricular orifice" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0010488 abnormal left subclavian artery morphology "any structural anomaly of the artery that extends from the aortic arch to the left side of the body" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0010854 lung situs inversus "anomaly in the asymmetry of the lung such that lung lobes on both the left and right side have the morphology normally seen on the opposite side of the body" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0011086 partial postnatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms anytime between the neonatal period and weaning age (Mus: P1 to approximately 3 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0011090 partial perinatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms within the perinatal period (Mus: E18.5 through postnatal day 1)" [MGI:csmith]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

 MP:0011091 complete prenatal lethality "death of all organisms of a given genotype in a population between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Itgb1tm2Son/Itgb1tm2Son
Genetic Background: FVB.129P2-Itgb1tm2Son

 MP:0011101 partial prenatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Portm1Ding/Por+,Speer6-ps1Tg(Alb-cre)21Mgn/Speer6-ps1+
Genetic Background: involves: 129S1/Sv * C57BL/6 * DBA

Allelic Composition: Mgrn1md-2J/Mgrn1md-2J
Genetic Background: involves: 129S1/SvImJ * C3H/HeJ

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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