ENSMUSG00000022948


Mus musculus

Features
Gene ID: ENSMUSG00000022948
  
Biological name :Setd4
  
Synonyms : Setd4 / SET domain containing 4
  
Possible biological names infered from orthology : Q9NVD3
  
Species: Mus musculus
  
Chr. number: 16
Strand: -1
Band: C4
Gene start: 93583457
Gene end: 93604063
  
Corresponding Affymetrix probe sets: 10441017 (MoGene1.0st)   1425239_at (Mouse Genome 430 2.0 Array)   1435405_at (Mouse Genome 430 2.0 Array)   1460373_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000023669
Ensembl peptide - ENSMUSP00000109584
NCBI entrez gene - 224440     See in Manteia.
MGI - MGI:2136890
RefSeq - XM_017316976
RefSeq - NM_145482
RefSeq - XM_017316974
RefSeq - XM_017316975
RefSeq - XM_006523015
RefSeq - XM_006523016
RefSeq - XM_006523017
RefSeq - XM_006523018
RefSeq - XM_011246121
RefSeq - XM_011246122
RefSeq - XM_017316973
RefSeq Peptide - NP_663457
swissprot - G3X9W6
Ensembl - ENSMUSG00000022948
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 setd4ENSDARG00000036592Danio rerio
 SETD4ENSGALG00000016024Gallus gallus
 SETD4ENSG00000185917Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Setd3 / Q91WC0 / SET domain containing 3 / Q86TU7*ENSMUSG0000005677021


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR015353  Rubisco LSMT, substrate-binding domain
 IPR016852  SET domain methyltransferase
 IPR036464  Rubisco LSMT, substrate-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001325 abnormal retina morphology "structural or developmental anomaly of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Ush1ctm1a(KOMP)Wtsi/Ush1ctm1a(KOMP)Wtsi
Genetic Background: C57BL/6N-Ush1ctm1a(KOMP)Wtsi/Wtsi

 MP:0005103 abnormal retinal pigmentation "anomalous coloring of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Ush1ctm1a(KOMP)Wtsi/Ush1ctm1a(KOMP)Wtsi
Genetic Background: C57BL/6N-Ush1ctm1a(KOMP)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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