ENSMUSG00000025134


Mus musculus

Features
Gene ID: ENSMUSG00000025134
  
Biological name :Alyref
  
Synonyms : Alyref / O08583 / THO complex subunit 4
  
Possible biological names infered from orthology : Aly/REF export factor
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: E2
Gene start: 120592121
Gene end: 120598365
  
Corresponding Affymetrix probe sets: 10393844 (MoGene1.0st)   1417724_at (Mouse Genome 430 2.0 Array)   1422993_s_at (Mouse Genome 430 2.0 Array)   1436211_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000026125
NCBI entrez gene - 21681     See in Manteia.
MGI - MGI:1341044
RefSeq - NM_011568
RefSeq Peptide - NP_035698
swissprot - O08583
Ensembl - ENSMUSG00000025134
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 alyrefENSDARG00000077732Danio rerio
 ALYREFENSGALG00000007237Gallus gallus
 ALYREFENSG00000183684Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Alyref2 / ALYREF* / Aly/REF export factor*ENSMUSG0000006024478
Gm21304 / RNA and export factor-binding protein 2-like ENSMUSG0000009755068
Gm21312ENSMUSG0000009414468
Gm6763ENSMUSG0000009742768
Gm20765ENSMUSG0000009502268
Gm8764ENSMUSG0000009787868
Gm4340ENSMUSG0000009085468
Gm21293 / RNA and export factor-binding protein 2-like ENSMUSG0000009177968
Gm4303ENSMUSG0000011293166
Gm4305ENSMUSG0000011285666
Gm4307ENSMUSG0000009674466
Gm4302ENSMUSG0000009110166
Gm4312ENSMUSG0000009664065
Gm4301ENSMUSG0000009431465


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR025715  Chromatin target of PRMT1 protein, C-terminal
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0003723 RNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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