ENSMUSG00000025439


Mus musculus

Features
Gene ID: ENSMUSG00000025439
  
Biological name :Clns1a
  
Synonyms : chloride nucleotide-sensitive channel 1A / Clns1a
  
Possible biological names infered from orthology : P54105
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: E1
Gene start: 97696634
Gene end: 97720796
  
Corresponding Affymetrix probe sets: 10555108 (MoGene1.0st)   1423181_s_at (Mouse Genome 430 2.0 Array)   1427548_a_at (Mouse Genome 430 2.0 Array)   1436935_x_at (Mouse Genome 430 2.0 Array)   1458906_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000026506
NCBI entrez gene - 12729     See in Manteia.
MGI - MGI:109638
RefSeq - NM_023671
RefSeq Peptide - NP_076160
swissprot - Q923F1
Ensembl - ENSMUSG00000025439
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 clns1aENSDARG00000103027Danio rerio
 CLNS1AENSGALG00000008574Gallus gallus
 CLNS1AENSG00000074201Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003521  ICln


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0006884 cell volume homeostasis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0034709 methylosome IEA
 cellular_componentGO:0034715 pICln-Sm protein complex IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000313 abnormal cell death "anomalous cessation of function at the cellular level" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Brca1tm2Cxd/Brca1tm2Cxd
Genetic Background: involves: 129S6/SvEvTac * NIH Black Swiss

 MP:0011096 complete embryonic lethality before somite formation "death of all organisms of a given genotype in a population between the point of implantation and somite formation (Mus: E4.5 to less than E8)" [MGI:csmith]
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Allelic Composition: Brca1tm2Cxd/Brca1tm2Cxd
Genetic Background: involves: 129S6/SvEvTac * NIH Black Swiss

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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