ENSMUSG00000026098


Mus musculus

Features
Gene ID: ENSMUSG00000026098
  
Biological name :Pms1
  
Synonyms : Pms1 / PMS1 homolog 1, mismatch repair system component
  
Possible biological names infered from orthology : P54277
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: C1.1
Gene start: 53189187
Gene end: 53297018
  
Corresponding Affymetrix probe sets: 10354542 (MoGene1.0st)   1438071_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000027267
Ensembl peptide - ENSMUSP00000122418
Ensembl peptide - ENSMUSP00000120670
Ensembl peptide - ENSMUSP00000120340
Ensembl peptide - ENSMUSP00000119632
Ensembl peptide - ENSMUSP00000115352
NCBI entrez gene - 227099     See in Manteia.
MGI - MGI:1202302
RefSeq - XM_006495941
RefSeq - XM_006495942
RefSeq - XM_006495943
RefSeq - XM_006495944
RefSeq - XM_011238497
RefSeq - NM_153556
RefSeq - XM_006495938
RefSeq - XM_006495939
RefSeq Peptide - NP_705784
swissprot - Q8K119
swissprot - D3Z611
swissprot - D3Z0R7
swissprot - D3Z012
swissprot - D3YX04
swissprot - E9Q8A5
Ensembl - ENSMUSG00000026098
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pms1ENSDARG00000000476Danio rerio
 PMS1ENSGALG00000034011Gallus gallus
 PMS1ENSG00000064933Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pms2 / PMS1 homolog2, mismatch repair system component / P54278*ENSMUSG0000007910921
Gm42421ENSMUSG000001046333


Protein motifs (from Interpro)
Interpro ID Name
 IPR002099  DNA mismatch repair protein family, N-terminal
 IPR003594  Histidine kinase/HSP90-like ATPase
 IPR009071  High mobility group box domain
 IPR013507  DNA mismatch repair protein, S5 domain 2-like
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR014762  DNA mismatch repair, conserved site
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR031263  PMS1 protein homologue 1
 IPR036890  Histidine kinase/HSP90-like ATPase superfamily
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006298 mismatch repair IMP
 biological_processGO:0042493 response to drug IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0032389 MutLalpha complex IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IBA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IBA
 molecular_functionGO:0030983 mismatched DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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