ENSGALG00000034011


Gallus gallus

Features
Gene ID: ENSGALG00000034011
  
Biological name :PMS1
  
Synonyms : PMS1 / PMS1 protein homolog 1
  
Possible biological names infered from orthology : P54277 / PMS1 homolog 1, mismatch repair system component
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 254729
Gene end: 299912
  
Corresponding Affymetrix probe sets: Gga.4931.1.S1_at (Chicken Array)   Gga.4931.2.S1_at (Chicken Array)   GgaAffx.12102.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045614
Ensembl peptide - ENSGALP00000058236
Ensembl peptide - ENSGALP00000050139
NCBI entrez gene - 423980     See in Manteia.
RefSeq - XM_015289158
RefSeq - XM_015289160
RefSeq - XM_015289159
RefSeq - NM_001006508
RefSeq Peptide - NP_001006508
swissprot - A0A1D5PZ28
swissprot - A0A1D5NZ03
swissprot - A0A1D5PBK9
Ensembl - ENSGALG00000034011
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pms1ENSDARG00000000476Danio rerio
 PMS1ENSG00000064933Homo sapiens
 Pms1ENSMUSG00000026098Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PMS2 / Gallus gallus PMS1 homolog 2, mismatch repair system component (PMS2), mRNA. / P54278* / Gm42421* / PMS1 homolog 2, mismatch repair system component*ENSGALG0000000343019


Protein motifs (from Interpro)
Interpro ID Name
 IPR002099  DNA mismatch repair protein family, N-terminal
 IPR003594  Histidine kinase/HSP90-like ATPase
 IPR009071  High mobility group box domain
 IPR013507  DNA mismatch repair protein, S5 domain 2-like
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR014762  DNA mismatch repair, conserved site
 IPR020568  Ribosomal protein S5 domain 2-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006298 mismatch repair IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0030983 mismatched DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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