ENSDARG00000000476


Danio rerio

Features
Gene ID: ENSDARG00000000476
  
Biological name :pms1
  
Synonyms : pms1 / PMS1 homolog 1, mismatch repair system component
  
Possible biological names infered from orthology : P54277
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 40948569
Gene end: 41025062
  
Corresponding Affymetrix probe sets: Dr.15901.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130371
Ensembl peptide - ENSDARP00000156514
Ensembl peptide - ENSDARP00000001250
NCBI entrez gene - 368631     See in Manteia.
RefSeq - NM_201319
RefSeq Peptide - NP_958476
swissprot - B0S640
ZFIN ID - ZDB-GENE-030616-528
Ensembl - ENSDARG00000000476
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PMS1ENSGALG00000034011Gallus gallus
 PMS1ENSG00000064933Homo sapiens
 Pms1ENSMUSG00000026098Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pms2 / PMS1 homolog 2, mismatch repair system component / P54278* / Gm42421*ENSDARG0000007567219


Protein motifs (from Interpro)
Interpro ID Name
 IPR002099  DNA mismatch repair protein family, N-terminal
 IPR003594  Histidine kinase/HSP90-like ATPase
 IPR009071  High mobility group box domain
 IPR013507  DNA mismatch repair protein, S5 domain 2-like
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR014762  DNA mismatch repair, conserved site
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR031263  PMS1 protein homologue 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006298 mismatch repair IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0032389 MutLalpha complex IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IBA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IBA
 molecular_functionGO:0030983 mismatched DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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