ENSDARG00000075672


Danio rerio

Features
Gene ID: ENSDARG00000075672
  
Biological name :pms2
  
Synonyms : PMS1 homolog 2, mismatch repair system component / pms2
  
Possible biological names infered from orthology : Gm42421 / P54278
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 17603528
Gene end: 17619524
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000099444
NCBI entrez gene - 565276     See in Manteia.
RefSeq - XM_021480287
RefSeq - XM_688556
swissprot - E7F558
ZFIN ID - ZDB-GENE-030131-686
Ensembl - ENSDARG00000075672
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PMS2ENSGALG00000003430Gallus gallus
 PMS2ENSG00000122512Homo sapiens
 Gm42421ENSMUSG00000104633Mus musculus
 Pms2ENSMUSG00000079109Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pms1 / PMS1 homolog 1, mismatch repair system component / P54277*ENSDARG0000000047620


Protein motifs (from Interpro)
Interpro ID Name
 IPR002099  DNA mismatch repair protein family, N-terminal
 IPR003594  Histidine kinase/HSP90-like ATPase
 IPR013507  DNA mismatch repair protein, S5 domain 2-like
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR014762  DNA mismatch repair, conserved site
 IPR014790  MutL, C-terminal, dimerisation
 IPR020568  Ribosomal protein S5 domain 2-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006298 mismatch repair IBA
 biological_processGO:0016446 somatic hypermutation of immunoglobulin genes IBA
 cellular_componentGO:0032389 MutLalpha complex IBA
 molecular_functionGO:0003697 single-stranded DNA binding IBA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IBA
 molecular_functionGO:0030983 mismatched DNA binding IEA


Pathways (from Reactome)
Pathway description
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000054155 pcna / Q9PTP1 / proliferating cell nuclear antigen / P17918* / P12004* / Pcna-ps2*  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr