ENSG00000122512


Homo sapiens

Features
Gene ID: ENSG00000122512
  
Biological name :PMS2
  
Synonyms : P54278 / PMS1 homolog 2, mismatch repair system component / PMS2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: p22.1
Gene start: 5973239
Gene end: 6009125
  
Corresponding Affymetrix probe sets: 209805_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495524
Ensembl peptide - ENSP00000494497
Ensembl peptide - ENSP00000496392
Ensembl peptide - ENSP00000265849
Ensembl peptide - ENSP00000371758
Ensembl peptide - ENSP00000392843
Ensembl peptide - ENSP00000493814
NCBI entrez gene - 5395     See in Manteia.
OMIM - 600259
RefSeq - NM_001322007
RefSeq - NM_000535
RefSeq - NM_001322003
RefSeq - NM_001322004
RefSeq - NM_001322005
RefSeq - NM_001322006
RefSeq - NM_001322008
RefSeq - NM_001322009
RefSeq - NM_001322010
RefSeq - NM_001322011
RefSeq - NM_001322012
RefSeq - NM_001322013
RefSeq - NM_001322014
RefSeq - NM_001322015
RefSeq - XM_006715744
RefSeq - XM_017012342
RefSeq Peptide - NP_000526
RefSeq Peptide - NP_001308933
RefSeq Peptide - NP_001308934
RefSeq Peptide - NP_001308935
RefSeq Peptide - NP_001308936
RefSeq Peptide - NP_001308937
RefSeq Peptide - NP_001308944
RefSeq Peptide - NP_001308932
RefSeq Peptide - NP_001308938
RefSeq Peptide - NP_001308939
RefSeq Peptide - NP_001308940
RefSeq Peptide - NP_001308941
RefSeq Peptide - NP_001308942
RefSeq Peptide - NP_001308943
swissprot - C9J167
swissprot - P54278
Ensembl - ENSG00000122512
  
Related genetic diseases (OMIM): 276300 - Mismatch repair cancer syndrome, 276300
  614337 - Colorectal cancer, hereditary nonpolyposis, type 4, 614337
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pms2ENSDARG00000075672Danio rerio
 PMS2ENSGALG00000003430Gallus gallus
 Pms2ENSMUSG00000079109Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PMS1 / P54277 / PMS1 homolog 1, mismatch repair system componentENSG0000006493322


Protein motifs (from Interpro)
Interpro ID Name
 IPR002099  DNA mismatch repair protein family, N-terminal
 IPR003594  Histidine kinase/HSP90-like ATPase
 IPR013507  DNA mismatch repair protein, S5 domain 2-like
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR014762  DNA mismatch repair, conserved site
 IPR014790  MutL, C-terminal, dimerisation
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR036890  Histidine kinase/HSP90-like ATPase superfamily
 IPR037198  MutL, C-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006298 mismatch repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0016446 somatic hypermutation of immunoglobulin genes IBA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0015630 microtubule cytoskeleton IDA
 cellular_componentGO:0032389 MutLalpha complex IBA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IDA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016887 ATPase activity IBA
 molecular_functionGO:0030983 mismatched DNA binding IEA
 molecular_functionGO:0032138 single base insertion or deletion binding IDA
 molecular_functionGO:0032407 MutSalpha complex binding IDA


Pathways (from Reactome)
Pathway description
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)
Defective Mismatch Repair Associated With MLH1
Defective Mismatch Repair Associated With PMS2
TP53 Regulates Transcription of DNA Repair Genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0000957 Cafe-au-lait spots 
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 HP:0000997 Axillary freckling 
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 HP:0001034 Hyperpigmented macules 
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 HP:0001123 Visual field defects 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001402 Hepatocellular carcinoma 
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 HP:0001438 Abnormality of the abdomen "Abnormality of the abdomen ("belly"), that is, the part of the body between the pelvis and the thorax." [HPO:curators]
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 HP:0001522 Death in infancy 
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 HP:0001824 Weight loss 
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 HP:0001909 Leukemia "A cancer of the blood and bone marrow characterized by an abnormal proliferation of leukocytes." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002019 Constipation 
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 HP:0002024 Malabsorption 
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 HP:0002027 Abdominal pain 
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 HP:0002076 Migraine 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002354 Memory impairment 
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 HP:0002376 Developmental regression 
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 HP:0002516 Increased intracranial pressure 
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002671 Basal cell carcinoma 
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 HP:0002859 Rhabdomyosarcoma 
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 HP:0002885 Medulloblastoma 
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 HP:0002888 Ependymoma 
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 HP:0002893 Pituitary adenoma 
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 HP:0003003 Colon cancer 
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 HP:0003006 Neuroblastoma "Neuroblastoma is a solid tumor that originate in neural crest cells of the sympathetic nervous system. Most neuroblastomas originate in the abdomen, and most abdominal neuroblastomas originate in the adrenal gland. Neuroblastomas can also originate in the thorax, usually in the posterior mediastinum." [HPO:curators]
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0006716 Hereditary nonpolyposis colorectal carcinoma 
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 HP:0006725 Pancreatic adenocarcinoma 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007256 Mild pyramidal signs 
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 HP:0009592 Astrocytoma "Astrocytoma is a neoplasm of the central nervous system derived from astrocytes." [HPO:curators]
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 HP:0010524 Agnosia "Inability to recognize objects not because of sensory deficit but because of the inability to combine components of sensory impressions into a complete pattern. Thus, agnosia is a neurological condition which results in an inability to know, to name, to identify, and to extract meaning from visual, auditory, or tactile impressions." [HPO:curators]
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 HP:0010526 Dysgraphia "A writing disability in the absence of motor or sensory deficits of the upper extremities, resulting in an impairment in the ability to write regardless of the ability to read and not due to intellectual impairment." [HPO:curators]
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 HP:0010622 Neoplasia of the skeletal system "`Neoplasia` (HP:0002664) affecting the `skeleton` (FMA:23875)." [HPO:probinson]
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 HP:0010786 Urinary tract neoplasia 
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 HP:0012113 Abnormality of creatine metabolism "An anomaly of the concentration or homeostasis of `creatine` (CHEBI:16919). Creatine is a derivative of glycine having methyl and amidino groups attached to the nitrogen. Creatine is naturally produced from amino acids, primarily in liver and kidney, and acts as an energy source for cells, primarly for muscle cells." [HPO:probinson]
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 HP:0012114 Endometrial carcinoma "A carcinoma of the endometrium, the mucous lining of the uterus." [HPO:probinson]
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 HP:0012174 Glioblastoma multiforme "A tumor arising from glia in the central nervous system with macroscopic regions of necrosis and hemorrhage. Microscopically, glioblastoma multiforme is characterized by regions of pseudopalisading necrosis, pleomorphic nuclei and cells, and microvascular proliferation." [HPO:probinson, pmid:10841526]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0100031 Neoplasm of the thyroid gland "The presence of a `neoplasm` (MPATH:218) of the `thyroid gland` (FMA:9603)." [HPO:probinson]
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 HP:0100571 Cardiac diverticulum "A cardiac diverticulum is a rare congential malformation which is either fibrous or muscular." [HPO:sdoelken]
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 HP:0100576 Amaurosis fugax "A transient visual disturbance that is typically caused by a circulatory, ocular or neurological underlying condition." [HPO:sdoelken]
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 HP:0100613 Death in early adulthood 
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 HP:0100615 Ovarian neoplasm "The presence of a `neoplasm` (MPATH:218) the `ovary` (FMA:7209)." [HPO:probinson]
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 HP:0100660 Dyskinesis "A movement disorder which consists of effects including diminished voluntary movements and the presence of involuntary movements." [HPO:sdoelken]
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 HP:0100743 Neoplasm of the rectum 
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 HP:0100835 Benign neoplasm of the central nervous system 
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 HP:0200008 Multiple intestinal polyps 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000095002 MSH2 / P43246 / mutS homolog 2  / reaction / complex
 ENSG00000116062 MSH6 / P52701 / mutS homolog 6  / complex / reaction
 ENSG00000076242 MLH1 / P40692 / mutL homolog 1  / reaction / complex
 ENSG00000113318 MSH3 / P20585 / mutS homolog 3  / complex / reaction
 ENSG00000174371 EXO1 / Q9UQ84 / exonuclease 1  / reaction
 ENSG00000132646 PCNA / P12004 / proliferating cell nuclear antigen  / reaction / complex






 

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