ENSG00000095002


Homo sapiens

Features
Gene ID: ENSG00000095002
  
Biological name :MSH2
  
Synonyms : MSH2 / mutS homolog 2 / P43246
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p21
Gene start: 47402969
Gene end: 47663146
  
Corresponding Affymetrix probe sets: 209421_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495543
Ensembl peptide - ENSP00000496441
Ensembl peptide - ENSP00000496351
Ensembl peptide - ENSP00000495641
Ensembl peptide - ENSP00000233146
Ensembl peptide - ENSP00000384199
Ensembl peptide - ENSP00000411482
Ensembl peptide - ENSP00000442697
Ensembl peptide - ENSP00000495455
NCBI entrez gene - 4436     See in Manteia.
OMIM - 609309
RefSeq - XM_005264332
RefSeq - XM_011532867
RefSeq - NM_000251
RefSeq - NM_001258281
RefSeq Peptide - NP_000242
RefSeq Peptide - NP_001245210
swissprot - P43246
swissprot - E9PHA6
swissprot - C9J809
Ensembl - ENSG00000095002
  
Related genetic diseases (OMIM): 120435 - Colorectal cancer, hereditary nonpolyposis, type 1, 120435
  158320 - Muir-Torre syndrome, 158320
  276300 - Mismatch repair cancer syndrome, 276300
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 msh2ENSDARG00000018022Danio rerio
 MSH2ENSGALG00000008962Gallus gallus
 Msh2ENSMUSG00000024151Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000432  DNA mismatch repair protein MutS, C-terminal
 IPR007695  DNA mismatch repair protein MutS-like, N-terminal
 IPR007696  DNA mismatch repair protein MutS, core
 IPR007860  DNA mismatch repair protein MutS, connector domain
 IPR007861  DNA mismatch repair protein MutS, clamp
 IPR011184  DNA mismatch repair Msh2-type
 IPR016151  DNA mismatch repair protein MutS, N-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032642  DNA mismatch repair protein Msh2
 IPR036187  DNA mismatch repair protein MutS, core domain superfamily
 IPR036678  MutS, connector domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0002204 somatic recombination of immunoglobulin genes involved in immune response IEA
 biological_processGO:0006119 oxidative phosphorylation IEA
 biological_processGO:0006281 DNA repair IDA
 biological_processGO:0006298 mismatch repair TAS
 biological_processGO:0006301 postreplication repair IDA
 biological_processGO:0006302 double-strand break repair IBA
 biological_processGO:0006311 meiotic gene conversion IBA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007050 cell cycle arrest IEA
 biological_processGO:0007281 germ cell development IEA
 biological_processGO:0008340 determination of adult lifespan IEA
 biological_processGO:0008584 male gonad development ISS
 biological_processGO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage IEA
 biological_processGO:0010165 response to X-ray ISS
 biological_processGO:0010224 response to UV-B IBA
 biological_processGO:0016446 somatic hypermutation of immunoglobulin genes IBA
 biological_processGO:0016447 somatic recombination of immunoglobulin gene segments ISS
 biological_processGO:0019724 B cell mediated immunity ISS
 biological_processGO:0030183 B cell differentiation ISS
 biological_processGO:0031573 intra-S DNA damage checkpoint IBA
 biological_processGO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IBA
 biological_processGO:0043524 negative regulation of neuron apoptotic process ISS
 biological_processGO:0043570 maintenance of DNA repeat elements IMP
 biological_processGO:0045128 negative regulation of reciprocal meiotic recombination IBA
 biological_processGO:0045190 isotype switching IBA
 biological_processGO:0045910 negative regulation of DNA recombination ISS
 biological_processGO:0048298 positive regulation of isotype switching to IgA isotypes IEA
 biological_processGO:0048304 positive regulation of isotype switching to IgG isotypes IEA
 biological_processGO:0051096 positive regulation of helicase activity IDA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region HDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0032300 mismatch repair complex IEA
 cellular_componentGO:0032301 MutSalpha complex IDA
 cellular_componentGO:0032302 MutSbeta complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000287 magnesium ion binding IDA
 molecular_functionGO:0000400 four-way junction DNA binding IDA
 molecular_functionGO:0000403 Y-form DNA binding IBA
 molecular_functionGO:0000404 heteroduplex DNA loop binding IBA
 molecular_functionGO:0000406 double-strand/single-strand DNA junction binding IBA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003684 damaged DNA binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IDA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IDA
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0008094 DNA-dependent ATPase activity IBA
 molecular_functionGO:0016887 ATPase activity IDA
 molecular_functionGO:0019237 centromeric DNA binding IEA
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0019901 protein kinase binding IPI
 molecular_functionGO:0030983 mismatched DNA binding IDA
 molecular_functionGO:0032137 guanine/thymine mispair binding IMP
 molecular_functionGO:0032139 dinucleotide insertion or deletion binding IDA
 molecular_functionGO:0032142 single guanine insertion binding IDA
 molecular_functionGO:0032143 single thymine insertion binding IDA
 molecular_functionGO:0032181 dinucleotide repeat insertion binding IDA
 molecular_functionGO:0032357 oxidized purine DNA binding IDA
 molecular_functionGO:0032405 MutLalpha complex binding IDA
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0043531 ADP binding IDA


Pathways (from Reactome)
Pathway description
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)
Defective Mismatch Repair Associated With MSH3
Defective Mismatch Repair Associated With MSH2
Defective Mismatch Repair Associated With MSH6
TP53 Regulates Transcription of DNA Repair Genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0000957 Cafe-au-lait spots 
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 HP:0000997 Axillary freckling 
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 HP:0001034 Hyperpigmented macules 
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 HP:0001123 Visual field defects 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001402 Hepatocellular carcinoma 
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 HP:0001438 Abnormality of the abdomen "Abnormality of the abdomen ("belly"), that is, the part of the body between the pelvis and the thorax." [HPO:curators]
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 HP:0001522 Death in infancy 
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 HP:0001824 Weight loss 
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 HP:0001909 Leukemia "A cancer of the blood and bone marrow characterized by an abnormal proliferation of leukocytes." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002019 Constipation 
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 HP:0002024 Malabsorption 
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 HP:0002027 Abdominal pain 
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 HP:0002076 Migraine 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002253 Colon diverticula 
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 HP:0002354 Memory impairment 
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 HP:0002376 Developmental regression 
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 HP:0002516 Increased intracranial pressure 
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002671 Basal cell carcinoma 
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 HP:0002859 Rhabdomyosarcoma 
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 HP:0002885 Medulloblastoma 
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 HP:0002888 Ependymoma 
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 HP:0002893 Pituitary adenoma 
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 HP:0002896 Liver cancer 
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 HP:0003002 Breast cancer 
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 HP:0003003 Colon cancer 
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 HP:0003006 Neuroblastoma "Neuroblastoma is a solid tumor that originate in neural crest cells of the sympathetic nervous system. Most neuroblastomas originate in the abdomen, and most abdominal neuroblastomas originate in the adrenal gland. Neuroblastomas can also originate in the thorax, usually in the posterior mediastinum." [HPO:curators]
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004377 Hematological cancer 
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 HP:0006719 Benign gastrointestinal tract tumors 
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 HP:0006725 Pancreatic adenocarcinoma 
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 HP:0006753 Increased gastric cancer 
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 HP:0006758 Malignant genitourinary tract tumors 
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 HP:0006771 Duodenal carcinoma 
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 HP:0006778 Benign genitourinary tract tumors 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007256 Mild pyramidal signs 
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 HP:0009592 Astrocytoma "Astrocytoma is a neoplasm of the central nervous system derived from astrocytes." [HPO:curators]
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 HP:0009720 Adenoma sebaceum "Facial angiofibromas, also known as adenoma sebaceum, are reddish papillary lesions (fibrous skin tumors) that are found around the nose, cheeks, and chin and considered to be characteristic of tuberous sclerosis." [HPO:curators]
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 HP:0009726 Renal neoplasia "Tumors, malignant or benign, originating in the kidney." [HPO:curators]
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 HP:0010524 Agnosia "Inability to recognize objects not because of sensory deficit but because of the inability to combine components of sensory impressions into a complete pattern. Thus, agnosia is a neurological condition which results in an inability to know, to name, to identify, and to extract meaning from visual, auditory, or tactile impressions." [HPO:curators]
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 HP:0010526 Dysgraphia "A writing disability in the absence of motor or sensory deficits of the upper extremities, resulting in an impairment in the ability to write regardless of the ability to read and not due to intellectual impairment." [HPO:curators]
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 HP:0010622 Neoplasia of the skeletal system "`Neoplasia` (HP:0002664) affecting the `skeleton` (FMA:23875)." [HPO:probinson]
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 HP:0010786 Urinary tract neoplasia 
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 HP:0012113 Abnormality of creatine metabolism "An anomaly of the concentration or homeostasis of `creatine` (CHEBI:16919). Creatine is a derivative of glycine having methyl and amidino groups attached to the nitrogen. Creatine is naturally produced from amino acids, primarily in liver and kidney, and acts as an energy source for cells, primarly for muscle cells." [HPO:probinson]
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 HP:0012114 Endometrial carcinoma "A carcinoma of the endometrium, the mucous lining of the uterus." [HPO:probinson]
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 HP:0012118 Laryngeal carcinoma "A carcinoma of the larynx." [HPO:probinson]
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 HP:0012174 Glioblastoma multiforme "A tumor arising from glia in the central nervous system with macroscopic regions of necrosis and hemorrhage. Microscopically, glioblastoma multiforme is characterized by regions of pseudopalisading necrosis, pleomorphic nuclei and cells, and microvascular proliferation." [HPO:probinson, pmid:10841526]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0030410 Sebaceous gland carcinoma "A carcinoma that arises in a sebaseous gland (an exocrine gland of the skin that secretes sebum, a waxy substance." [HPO:probinson]
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 HP:0100031 Neoplasm of the thyroid gland "The presence of a `neoplasm` (MPATH:218) of the `thyroid gland` (FMA:9603)." [HPO:probinson]
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 HP:0100571 Cardiac diverticulum "A cardiac diverticulum is a rare congential malformation which is either fibrous or muscular." [HPO:sdoelken]
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 HP:0100576 Amaurosis fugax "A transient visual disturbance that is typically caused by a circulatory, ocular or neurological underlying condition." [HPO:sdoelken]
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 HP:0100613 Death in early adulthood 
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 HP:0100615 Ovarian neoplasm "The presence of a `neoplasm` (MPATH:218) the `ovary` (FMA:7209)." [HPO:probinson]
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 HP:0100660 Dyskinesis "A movement disorder which consists of effects including diminished voluntary movements and the presence of involuntary movements." [HPO:sdoelken]
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 HP:0100684 Salivary gland neoplasia 
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 HP:0100743 Neoplasm of the rectum 
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 HP:0100835 Benign neoplasm of the central nervous system 
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 HP:0200008 Multiple intestinal polyps 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000132646 PCNA / P12004 / proliferating cell nuclear antigen  / complex / reaction
 ENSG00000122512 PMS2 / P54278 / PMS1 homolog 2, mismatch repair system component  / complex / reaction
 ENSG00000076242 MLH1 / P40692 / mutL homolog 1  / complex / reaction
 ENSG00000113318 MSH3 / P20585 / mutS homolog 3  / reaction / complex
 ENSG00000116062 MSH6 / P52701 / mutS homolog 6  / reaction / complex
 ENSG00000174371 EXO1 / Q9UQ84 / exonuclease 1  / reaction






 

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