ENSG00000076242


Homo sapiens

Features
Gene ID: ENSG00000076242
  
Biological name :MLH1
  
Synonyms : MLH1 / mutL homolog 1 / P40692
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p22.2
Gene start: 36993332
Gene end: 37050918
  
Corresponding Affymetrix probe sets: 202520_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000416476
Ensembl peptide - ENSP00000411066
Ensembl peptide - ENSP00000416687
Ensembl peptide - ENSP00000480669
Ensembl peptide - ENSP00000444286
Ensembl peptide - ENSP00000443665
Ensembl peptide - ENSP00000416783
Ensembl peptide - ENSP00000231790
Ensembl peptide - ENSP00000387511
Ensembl peptide - ENSP00000392649
Ensembl peptide - ENSP00000393006
Ensembl peptide - ENSP00000398272
Ensembl peptide - ENSP00000398392
Ensembl peptide - ENSP00000399329
Ensembl peptide - ENSP00000400844
Ensembl peptide - ENSP00000402564
Ensembl peptide - ENSP00000402667
Ensembl peptide - ENSP00000407019
Ensembl peptide - ENSP00000407773
NCBI entrez gene - 4292     See in Manteia.
OMIM - 120436
RefSeq - NM_001354617
RefSeq - NM_000249
RefSeq - NM_001167617
RefSeq - NM_001167618
RefSeq - NM_001167619
RefSeq - NM_001258271
RefSeq - NM_001258273
RefSeq - NM_001258274
RefSeq - NM_001354620
RefSeq - XM_005265161
RefSeq - XM_005265163
RefSeq - XM_005265164
RefSeq - XM_005265166
RefSeq - XM_011533727
RefSeq - XM_017006449
RefSeq - XM_017006450
RefSeq - XM_017006451
RefSeq Peptide - NP_001341548
RefSeq Peptide - NP_001341549
RefSeq Peptide - NP_000240
RefSeq Peptide - NP_001161089
RefSeq Peptide - NP_001161090
RefSeq Peptide - NP_001161091
RefSeq Peptide - NP_001245200
RefSeq Peptide - NP_001245202
RefSeq Peptide - NP_001245203
RefSeq Peptide - NP_001341544
RefSeq Peptide - NP_001341545
RefSeq Peptide - NP_001341546
RefSeq Peptide - NP_001341547
swissprot - A0A087WX20
swissprot - F2Z298
swissprot - A0A024R2S9
swissprot - P40692
swissprot - H0Y4N0
swissprot - H0Y5L7
swissprot - H0Y5U4
swissprot - H0Y793
swissprot - H0Y806
swissprot - H0Y818
swissprot - E9PF25
swissprot - E7EUC9
swissprot - C9JZ54
Ensembl - ENSG00000076242
  
Related genetic diseases (OMIM): 158320 - Muir-Torre syndrome, 158320
  276300 - Mismatch repair cancer syndrome, 276300
  609310 - Colorectal cancer, hereditary nonpolyposis, type 2, 609310
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mlh1ENSDARG00000025948Danio rerio
 MLH1ENSGALG00000039169Gallus gallus
 Mlh1ENSMUSG00000032498Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002099  DNA mismatch repair protein family, N-terminal
 IPR003594  Histidine kinase/HSP90-like ATPase
 IPR011186  DNA mismatch repair protein Mlh1
 IPR013507  DNA mismatch repair protein, S5 domain 2-like
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR014762  DNA mismatch repair, conserved site
 IPR020568  Ribosomal protein S5 domain 2-type fold
 IPR032189  DNA mismatch repair protein Mlh1, C-terminal
 IPR036890  Histidine kinase/HSP90-like ATPase superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEA
 biological_processGO:0000712 resolution of meiotic recombination intermediates IEA
 biological_processGO:0002204 somatic recombination of immunoglobulin genes involved in immune response IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006298 mismatch repair IGI
 biological_processGO:0006303 double-strand break repair via nonhomologous end joining IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007060 male meiosis chromosome segregation IEA
 biological_processGO:0007129 synapsis IEA
 biological_processGO:0007131 reciprocal meiotic recombination IEA
 biological_processGO:0007140 male meiotic nuclear division IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage IEA
 biological_processGO:0016321 female meiosis chromosome segregation IEA
 biological_processGO:0016446 somatic hypermutation of immunoglobulin genes IBA
 biological_processGO:0016447 somatic recombination of immunoglobulin gene segments IEA
 biological_processGO:0043060 meiotic metaphase I plate congression IEA
 biological_processGO:0045132 meiotic chromosome segregation IEA
 biological_processGO:0045141 meiotic telomere clustering IEA
 biological_processGO:0045143 homologous chromosome segregation IEA
 biological_processGO:0045190 isotype switching IEA
 biological_processGO:0045950 negative regulation of mitotic recombination IEA
 biological_processGO:0048298 positive regulation of isotype switching to IgA isotypes IEA
 biological_processGO:0048304 positive regulation of isotype switching to IgG isotypes IEA
 biological_processGO:0048477 oogenesis IEA
 biological_processGO:0051257 meiotic spindle midzone assembly IEA
 biological_processGO:0051321 meiotic cell cycle IEA
 cellular_componentGO:0000793 condensed chromosome IEA
 cellular_componentGO:0000794 condensed nuclear chromosome IEA
 cellular_componentGO:0000795 synaptonemal complex IBA
 cellular_componentGO:0001673 male germ cell nucleus IEA
 cellular_componentGO:0005634 nucleus IC
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005712 chiasma IBA
 cellular_componentGO:0005715 late recombination nodule IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0032300 mismatch repair complex IEA
 cellular_componentGO:0032389 MutLalpha complex IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IBA
 molecular_functionGO:0030983 mismatched DNA binding IEA
 molecular_functionGO:0032137 guanine/thymine mispair binding IEA
 molecular_functionGO:0032407 MutSalpha complex binding IDA


Pathways (from Reactome)
Pathway description
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)
Defective Mismatch Repair Associated With MLH1
Defective Mismatch Repair Associated With PMS2
TP53 Regulates Transcription of DNA Repair Genes
Meiotic recombination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
Show

 HP:0000737 Irritability 
Show

 HP:0000738 Hallucinations 
Show

 HP:0000739 Anxiety 
Show

 HP:0000957 Cafe-au-lait spots 
Show

 HP:0000997 Axillary freckling 
Show

 HP:0001034 Hyperpigmented macules 
Show

 HP:0001123 Visual field defects 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
Show

 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
Show

 HP:0001276 Hypertonia 
Show

 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
Show

 HP:0001371 Contractures 
Show

 HP:0001402 Hepatocellular carcinoma 
Show

 HP:0001438 Abnormality of the abdomen "Abnormality of the abdomen ("belly"), that is, the part of the body between the pelvis and the thorax." [HPO:curators]
Show

 HP:0001522 Death in infancy 
Show

 HP:0001824 Weight loss 
Show

 HP:0001909 Leukemia "A cancer of the blood and bone marrow characterized by an abnormal proliferation of leukocytes." [HPO:curators]
Show

 HP:0002017 Nausea and vomiting 
Show

 HP:0002019 Constipation 
Show

 HP:0002024 Malabsorption 
Show

 HP:0002027 Abdominal pain 
Show

 HP:0002076 Migraine 
Show

 HP:0002239 Gastrointestinal hemorrhage 
Show

 HP:0002253 Colon diverticula 
Show

 HP:0002354 Memory impairment 
Show

 HP:0002376 Developmental regression 
Show

 HP:0002516 Increased intracranial pressure 
Show

 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
Show

 HP:0002671 Basal cell carcinoma 
Show

 HP:0002859 Rhabdomyosarcoma 
Show

 HP:0002885 Medulloblastoma 
Show

 HP:0002888 Ependymoma 
Show

 HP:0002893 Pituitary adenoma 
Show

 HP:0002896 Liver cancer 
Show

 HP:0003002 Breast cancer 
Show

 HP:0003003 Colon cancer 
Show

 HP:0003006 Neuroblastoma "Neuroblastoma is a solid tumor that originate in neural crest cells of the sympathetic nervous system. Most neuroblastomas originate in the abdomen, and most abdominal neuroblastomas originate in the adrenal gland. Neuroblastomas can also originate in the thorax, usually in the posterior mediastinum." [HPO:curators]
Show

 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
Show

 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
Show

 HP:0004377 Hematological cancer 
Show

 HP:0006719 Benign gastrointestinal tract tumors 
Show

 HP:0006725 Pancreatic adenocarcinoma 
Show

 HP:0006753 Increased gastric cancer 
Show

 HP:0006758 Malignant genitourinary tract tumors 
Show

 HP:0006771 Duodenal carcinoma 
Show

 HP:0006778 Benign genitourinary tract tumors 
Show

 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
Show

 HP:0007256 Mild pyramidal signs 
Show

 HP:0009592 Astrocytoma "Astrocytoma is a neoplasm of the central nervous system derived from astrocytes." [HPO:curators]
Show

 HP:0009720 Adenoma sebaceum "Facial angiofibromas, also known as adenoma sebaceum, are reddish papillary lesions (fibrous skin tumors) that are found around the nose, cheeks, and chin and considered to be characteristic of tuberous sclerosis." [HPO:curators]
Show

 HP:0009726 Renal neoplasia "Tumors, malignant or benign, originating in the kidney." [HPO:curators]
Show

 HP:0010524 Agnosia "Inability to recognize objects not because of sensory deficit but because of the inability to combine components of sensory impressions into a complete pattern. Thus, agnosia is a neurological condition which results in an inability to know, to name, to identify, and to extract meaning from visual, auditory, or tactile impressions." [HPO:curators]
Show

 HP:0010526 Dysgraphia "A writing disability in the absence of motor or sensory deficits of the upper extremities, resulting in an impairment in the ability to write regardless of the ability to read and not due to intellectual impairment." [HPO:curators]
Show

 HP:0010622 Neoplasia of the skeletal system "`Neoplasia` (HP:0002664) affecting the `skeleton` (FMA:23875)." [HPO:probinson]
Show

 HP:0010786 Urinary tract neoplasia 
Show

 HP:0012113 Abnormality of creatine metabolism "An anomaly of the concentration or homeostasis of `creatine` (CHEBI:16919). Creatine is a derivative of glycine having methyl and amidino groups attached to the nitrogen. Creatine is naturally produced from amino acids, primarily in liver and kidney, and acts as an energy source for cells, primarly for muscle cells." [HPO:probinson]
Show

 HP:0012114 Endometrial carcinoma "A carcinoma of the endometrium, the mucous lining of the uterus." [HPO:probinson]
Show

 HP:0012118 Laryngeal carcinoma "A carcinoma of the larynx." [HPO:probinson]
Show

 HP:0012174 Glioblastoma multiforme "A tumor arising from glia in the central nervous system with macroscopic regions of necrosis and hemorrhage. Microscopically, glioblastoma multiforme is characterized by regions of pseudopalisading necrosis, pleomorphic nuclei and cells, and microvascular proliferation." [HPO:probinson, pmid:10841526]
Show

 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
Show

 HP:0030410 Sebaceous gland carcinoma "A carcinoma that arises in a sebaseous gland (an exocrine gland of the skin that secretes sebum, a waxy substance." [HPO:probinson]
Show

 HP:0100031 Neoplasm of the thyroid gland "The presence of a `neoplasm` (MPATH:218) of the `thyroid gland` (FMA:9603)." [HPO:probinson]
Show

 HP:0100571 Cardiac diverticulum "A cardiac diverticulum is a rare congential malformation which is either fibrous or muscular." [HPO:sdoelken]
Show

 HP:0100576 Amaurosis fugax "A transient visual disturbance that is typically caused by a circulatory, ocular or neurological underlying condition." [HPO:sdoelken]
Show

 HP:0100613 Death in early adulthood 
Show

 HP:0100615 Ovarian neoplasm "The presence of a `neoplasm` (MPATH:218) the `ovary` (FMA:7209)." [HPO:probinson]
Show

 HP:0100660 Dyskinesis "A movement disorder which consists of effects including diminished voluntary movements and the presence of involuntary movements." [HPO:sdoelken]
Show

 HP:0100684 Salivary gland neoplasia 
Show

 HP:0100743 Neoplasm of the rectum 
Show

 HP:0100835 Benign neoplasm of the central nervous system 
Show

 HP:0200008 Multiple intestinal polyps 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000095002 MSH2 / P43246 / mutS homolog 2  / complex / reaction
 ENSG00000116062 MSH6 / P52701 / mutS homolog 6  / complex / reaction
 ENSG00000119684 MLH3 / Q9UHC1 / mutL homolog 3  / complex
 ENSG00000122512 PMS2 / P54278 / PMS1 homolog 2, mismatch repair system component  / reaction / complex
 ENSG00000123374 CDK2 / P24941 / cyclin dependent kinase 2  / complex
 ENSG00000113318 MSH3 / P20585 / mutS homolog 3  / complex / reaction
 ENSG00000149311 ATM / Q13315 / ATM serine/threonine kinase  / complex
 ENSG00000174371 EXO1 / Q9UQ84 / exonuclease 1  / reaction
 ENSG00000132646 PCNA / P12004 / proliferating cell nuclear antigen  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr