ENSGALG00000003430


Gallus gallus

Features
Gene ID: ENSGALG00000003430
  
Biological name :PMS2
  
Synonyms : Gallus gallus PMS1 homolog 2, mismatch repair system component (PMS2), mRNA. / PMS2
  
Possible biological names infered from orthology : Gm42421 / P54278 / PMS1 homolog 2, mismatch repair system component
  
Species: Gallus gallus
  
Chr. number: 14
Strand: 1
Band:
Gene start: 979256
Gene end: 991301
  
Corresponding Affymetrix probe sets: GgaAffx.2132.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005417
NCBI entrez gene - 101752182     See in Manteia.
RefSeq - NM_001319022
RefSeq - XM_015294281
RefSeq Peptide - NP_001305951
swissprot - A0A1C7CYU1
Ensembl - ENSGALG00000003430
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pms2ENSDARG00000075672Danio rerio
 PMS2ENSG00000122512Homo sapiens
 Gm42421ENSMUSG00000104633Mus musculus
 Pms2ENSMUSG00000079109Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PMS1 / PMS1 protein homolog 1 / P54277* / PMS1 homolog 1, mismatch repair system component*ENSGALG0000003401120


Protein motifs (from Interpro)
Interpro ID Name
 IPR002099  DNA mismatch repair protein family, N-terminal
 IPR003594  Histidine kinase/HSP90-like ATPase
 IPR013507  DNA mismatch repair protein, S5 domain 2-like
 IPR014721  Ribosomal protein S5 domain 2-type fold, subgroup
 IPR014762  DNA mismatch repair, conserved site
 IPR014790  MutL, C-terminal, dimerisation
 IPR020568  Ribosomal protein S5 domain 2-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006298 mismatch repair IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0030983 mismatched DNA binding IEA
 molecular_functionGO:0032138 single base insertion or deletion binding IEA
 molecular_functionGO:0032407 MutSalpha complex binding IEA


Pathways (from Reactome)
Pathway description
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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