ENSMUSG00000027291


Mus musculus

Features
Gene ID: ENSMUSG00000027291
  
Biological name :Vps39
  
Synonyms : Q8R5L3 / Vps39 / VPS39 HOPS complex subunit
  
Possible biological names infered from orthology : Q96JC1
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: E5
Gene start: 120316461
Gene end: 120353137
  
Corresponding Affymetrix probe sets: 10486469 (MoGene1.0st)   1425474_a_at (Mouse Genome 430 2.0 Array)   1451720_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000028752
Ensembl peptide - ENSMUSP00000099559
NCBI entrez gene - 269338     See in Manteia.
MGI - MGI:2443189
RefSeq - XM_006499598
RefSeq - NM_147153
RefSeq - NM_178851
RefSeq Peptide - NP_849182
RefSeq Peptide - NP_671495
swissprot - Q3USV9
swissprot - Q5KU38
swissprot - Q8R5L3
Ensembl - ENSMUSG00000027291
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps39ENSDARG00000074471Danio rerio
 VPS39ENSGALG00000008991Gallus gallus
 VPS39ENSG00000166887Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q3UR70 / Tgfbrap1 / Mus musculus transforming growth factor, beta receptor associated protein 1 (Tgfbrap1), transcript variant 2, mRNA. / Q8WUH2* / transforming growth factor beta receptor ...ENSMUSG0000007093923


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR001180  Citron homology (CNH) domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR019452  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
 IPR019453  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
 IPR032914  Vam6/VPS39/TRAP1 family
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006914 autophagy ISO
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IBA
 biological_processGO:0034058 endosomal vesicle fusion IEA
 biological_processGO:1902774 late endosome to lysosome transport ISO
 biological_processGO:1990126 retrograde transport, endosome to plasma membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane ISO
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030123 AP-3 adaptor complex IDA
 cellular_componentGO:0030897 HOPS complex ISO
 cellular_componentGO:0031902 late endosome membrane ISO
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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