ENSMUSG00000070939


Mus musculus

Features
Gene ID: ENSMUSG00000070939
  
Biological name :Tgfbrap1
  
Synonyms : Mus musculus transforming growth factor, beta receptor associated protein 1 (Tgfbrap1), transcript variant 2, mRNA. / Q3UR70 / Tgfbrap1
  
Possible biological names infered from orthology : Q8WUH2 / transforming growth factor beta receptor associated protein 1
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: B
Gene start: 43047200
Gene end: 43098637
  
Corresponding Affymetrix probe sets: 10354233 (MoGene1.0st)   1428425_at (Mouse Genome 430 2.0 Array)   1428426_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000140413
Ensembl peptide - ENSMUSP00000140132
Ensembl peptide - ENSMUSP00000140169
Ensembl peptide - ENSMUSP00000140384
Ensembl peptide - ENSMUSP00000092624
NCBI entrez gene - 73122     See in Manteia.
MGI - MGI:2447427
RefSeq - XM_017312455
RefSeq - XM_006496300
RefSeq - XM_006496301
RefSeq - XM_006496302
RefSeq - XM_006496303
RefSeq - XM_011238603
RefSeq - XM_011238604
RefSeq - NM_001013025
RefSeq - NM_001357299
RefSeq Peptide - NP_001013043
RefSeq Peptide - NP_001344228
swissprot - A0A087WR01
swissprot - A0A087WQX7
swissprot - Q3UR70
swissprot - A0A087WQF3
Ensembl - ENSMUSG00000070939
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tgfbrap1ENSDARG00000061508Danio rerio
 TGFBRAP1ENSGALG00000016795Gallus gallus
 Q8WUH2ENSG00000135966Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Vps39 / Q8R5L3 / VPS39 HOPS complex subunit / Q96JC1*ENSMUSG0000002729124


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR001180  Citron homology (CNH) domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR019452  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
 IPR019453  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
 IPR032914  Vam6/VPS39/TRAP1 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated ISO
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007165 signal transduction ISO
 biological_processGO:0008333 endosome to lysosome transport ISO
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0034058 endosomal vesicle fusion ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome ISO
 cellular_componentGO:0016020 membrane ISO
 cellular_componentGO:0033263 CORVET complex IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle ISO
 molecular_functionGO:0005160 transforming growth factor beta receptor binding ISO
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046332 SMAD binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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