ENSDARG00000061508


Danio rerio

Features
Gene ID: ENSDARG00000061508
  
Biological name :tgfbrap1
  
Synonyms : tgfbrap1 / transforming growth factor, beta receptor associated protein 1
  
Possible biological names infered from orthology : Mus musculus transforming growth factor, beta receptor associated protein 1 (Tgfbrap1), transcript variant 2, mRNA. / Q3UR70 / Q8WUH2
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 15036828
Gene end: 15065376
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000082230
NCBI entrez gene - 565026     See in Manteia.
RefSeq - NM_001083554
RefSeq Peptide - NP_001077023
swissprot - F1QP13
ZFIN ID - ZDB-GENE-070410-66
Ensembl - ENSDARG00000061508
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TGFBRAP1ENSGALG00000016795Gallus gallus
 Q8WUH2ENSG00000135966Homo sapiens
 Q3UR70ENSMUSG00000070939Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-266g18.9ENSDARG0000007590533
vps39 / vacuolar protein sorting 39 homolog (S. cerevisiae) / Q8R5L3* / Q96JC1* / VPS39, HOPS complex subunit*ENSDARG0000007447124


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR001180  Citron homology (CNH) domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR019452  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
 IPR019453  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0005622 intracellular IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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