ENSGALG00000016795


Gallus gallus

Features
Gene ID: ENSGALG00000016795
  
Biological name :TGFBRAP1
  
Synonyms : TGFBRAP1 / transforming growth factor beta receptor associated protein 1
  
Possible biological names infered from orthology : Mus musculus transforming growth factor, beta receptor associated protein 1 (Tgfbrap1), transcript variant 2, mRNA. / Q3UR70 / Q8WUH2
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 135184285
Gene end: 135210743
  
Corresponding Affymetrix probe sets: GgaAffx.10752.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027065
NCBI entrez gene - 418724     See in Manteia.
RefSeq - XM_416922
swissprot - F1P4R5
Ensembl - ENSGALG00000016795
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tgfbrap1ENSDARG00000061508Danio rerio
 Q8WUH2ENSG00000135966Homo sapiens
 Q3UR70ENSMUSG00000070939Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VPS39 / vam6/Vps39-like protein / Q8R5L3* / Q96JC1* / VPS39, HOPS complex subunit*ENSGALG0000000899125


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR001180  Citron homology (CNH) domain
 IPR019452  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
 IPR019453  Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0034058 endosomal vesicle fusion IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0033263 CORVET complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0005160 transforming growth factor beta receptor binding IEA
 molecular_functionGO:0046332 SMAD binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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