ENSMUSG00000028688


Mus musculus

Features
Gene ID: ENSMUSG00000028688
  
Biological name :Toe1
  
Synonyms : Q9D2E2 / Target of EGR1 protein 1 / Toe1
  
Possible biological names infered from orthology : Q96GM8 / target of EGR1, exonuclease
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: D1
Gene start: 116794310
Gene end: 116807640
  
Corresponding Affymetrix probe sets: 10515368 (MoGene1.0st)   1426527_at (Mouse Genome 430 2.0 Array)   1432207_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000030451
Ensembl peptide - ENSMUSP00000102063
Ensembl peptide - ENSMUSP00000117019
NCBI entrez gene - 68276     See in Manteia.
MGI - MGI:1915526
RefSeq - NM_026654
RefSeq - XM_006503353
RefSeq Peptide - NP_080930
swissprot - F6ZMT3
swissprot - Q9D2E2
Ensembl - ENSMUSG00000028688
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 toe1ENSDARG00000077544Danio rerio
 TOE1ENSGALG00000010228Gallus gallus
 TOE1ENSG00000132773Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR006941  Ribonuclease CAF1
 IPR012337  Ribonuclease H-like superfamily
 IPR036397  Ribonuclease H superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0034472 snRNA 3"-end processing IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0000175 3"-5"-exoribonuclease activity IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity IEA
 molecular_functionGO:0017069 snRNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Tmem100tm1e.1(KOMP)Wtsi/Tmem100tm1e.1(KOMP)Wtsi
Genetic Background: C57BL/6N-Tmem100tm1e.1(KOMP)Wtsi/Tcp

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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