ENSMUSG00000029761


Mus musculus

Features
Gene ID: ENSMUSG00000029761
  
Biological name :Cald1
  
Synonyms : Cald1 / caldesmon 1
  
Possible biological names infered from orthology : Q05682
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: B1
Gene start: 34598500
Gene end: 34775473
  
Corresponding Affymetrix probe sets: 10537184 (MoGene1.0st)   1424768_at (Mouse Genome 430 2.0 Array)   1424769_s_at (Mouse Genome 430 2.0 Array)   1424770_at (Mouse Genome 430 2.0 Array)   1433147_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000117064
Ensembl peptide - ENSMUSP00000116247
Ensembl peptide - ENSMUSP00000121213
Ensembl peptide - ENSMUSP00000138368
Ensembl peptide - ENSMUSP00000122926
Ensembl peptide - ENSMUSP00000121911
Ensembl peptide - ENSMUSP00000031775
Ensembl peptide - ENSMUSP00000078362
Ensembl peptide - ENSMUSP00000110673
Ensembl peptide - ENSMUSP00000110678
Ensembl peptide - ENSMUSP00000110679
NCBI entrez gene - 109624     See in Manteia.
MGI - MGI:88250
RefSeq - XM_017321321
RefSeq - NM_145575
RefSeq - XM_006505345
RefSeq - XM_006505346
RefSeq - XM_006505348
RefSeq - XM_006505351
RefSeq - XM_006505352
RefSeq - XM_017321314
RefSeq - XM_017321315
RefSeq - XM_017321316
RefSeq - XM_017321317
RefSeq - XM_017321318
RefSeq - XM_017321319
RefSeq - XM_017321320
RefSeq - NM_001347100
RefSeq Peptide - NP_663550
RefSeq Peptide - NP_001334029
swissprot - E9Q9F3
swissprot - F6QLP8
swissprot - F6RGN9
swissprot - F6T2Z7
swissprot - F6ZAW1
swissprot - E9Q0M9
swissprot - S4R1T7
swissprot - D3Z6I7
swissprot - E9QA16
swissprot - Q8VCQ8
swissprot - E9QA15
Ensembl - ENSMUSG00000029761
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cald1bENSDARG00000086391Danio rerio
 CALD1ENSGALG00000033471Gallus gallus
 CALD1ENSG00000122786Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006017  Caldesmon
 IPR006018  Caldesmon/lymphocyte specific protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006936 muscle contraction IEA
 biological_processGO:0006940 regulation of smooth muscle contraction TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0030478 actin cap IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0003779 actin binding TAS
 molecular_functionGO:0005516 calmodulin binding IEA
 molecular_functionGO:0017022 myosin binding IEA
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
Smooth Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003052 omphalocele "protrusion of abdominal viscera at the base of the umbilical cord, with a covering membranous sac of peritoneum-amnion" [Stedman s Medical Dictionary, 27th edition:ISBN 0-683-40008-8, MeSH:National Library of Medicine - Medical Subject Headings, 2003, ava:Anna V. Anagnostopoulos, Mouse Genome Informatics Curator]
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Allelic Composition: Tnfsf4Ath1-PERA/EiJ/Tnfsf4Ath1-PERA/EiJ
Genetic Background: B6.PERA-Tnfsf4Ath1-PERA/EiJ/Pgn

 MP:0010386 abnormal urinary bladder physiology "any functional anomaly of the distensible musculomembranous organ that serves to collect and store urine excreted by the kidneys" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
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Allelic Composition: Ccr2tm1.1(CCR2)Rodb/Ccr2tm1.1(CCR2)Rodb
Genetic Background: involves: C57BL/6

 MP:0011088 partial neonatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms within the neonatal period after birth (Mus: P0)" [MGI:csmith]
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Allelic Composition: Tnfsf4Ath1-PERA/EiJ/Tnfsf4Ath1-PERA/EiJ
Genetic Background: B6.PERA-Tnfsf4Ath1-PERA/EiJ/Pgn

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Ccr2tm1.1(CCR2)Rodb/Ccr2tm1.1(CCR2)Rodb
Genetic Background: involves: C57BL/6

 MP:0011774 abnormal urinary bladder detrusor smooth muscle morphology "any structural anomaly of the bundles of smooth muscle fibers forming the muscular wall of the urinary bladder, which are arranged in a longitudinal and a circular layer and, on contraction, serve to expel urine" [MGI:anna]
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Allelic Composition: Ccr2tm1.1(CCR2)Rodb/Ccr2tm1.1(CCR2)Rodb
Genetic Background: involves: C57BL/6

 MP:0011799 increased urinary bladder weight "greater than average weight of the distensible musculomembranous organ that serves to collect and store urine excreted by the kidneys compared to controls" [MGI:anna]
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Allelic Composition: Ccr2tm1.1(CCR2)Rodb/Ccr2tm1.1(CCR2)Rodb
Genetic Background: involves: C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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