ENSMUSG00000031060


Mus musculus

Features
Gene ID: ENSMUSG00000031060
  
Biological name :Rbm10
  
Synonyms : Mus musculus RNA binding motif protein 10 (Rbm10), transcript variant 4, mRNA. / Q99KG3 / Rbm10
  
Possible biological names infered from orthology : P98175 / RNA binding motif protein 10
  
Species: Mus musculus
  
Chr. number: X
Strand: 1
Band: A1.3
Gene start: 20617503
Gene end: 20650901
  
Corresponding Affymetrix probe sets: 10598872 (MoGene1.0st)   1423740_a_at (Mouse Genome 430 2.0 Array)   1423741_at (Mouse Genome 430 2.0 Array)   1423742_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000068188
Ensembl peptide - ENSMUSP00000080738
Ensembl peptide - ENSMUSP00000111031
Ensembl peptide - ENSMUSP00000111032
Ensembl peptide - ENSMUSP00000111033
Ensembl peptide - ENSMUSP00000136209
NCBI entrez gene - 236732     See in Manteia.
MGI - MGI:2384310
RefSeq - XM_006527621
RefSeq - NM_001167775
RefSeq - NM_001167776
RefSeq - NM_001358903
RefSeq - NM_001358904
RefSeq - NM_145627
RefSeq - XM_006527618
RefSeq - XM_006527619
RefSeq - XM_006527620
RefSeq Peptide - NP_663602
RefSeq Peptide - NP_001161247
RefSeq Peptide - NP_001161248
RefSeq Peptide - NP_001345832
RefSeq Peptide - NP_001345833
swissprot - Q99KG3
Ensembl - ENSMUSG00000031060
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm10ENSDARG00000077400Danio rerio
 RBM10ENSG00000182872Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rbm5 / Q91YE7 / RNA-binding protein 5 / P52756* / RNA binding motif protein 5*ENSMUSG0000003258048
Rbm6 / RNA binding motif protein 6 / P78332*ENSMUSG0000003258224


Protein motifs (from Interpro)
Interpro ID Name
 IPR000467  G-patch domain
 IPR000504  RNA recognition motif domain
 IPR001876  Zinc finger, RanBP2-type
 IPR013087  Zinc finger C2H2-type
 IPR033095  RNA-binding protein 10
 IPR034992  RNA-binding protein 10, RNA recognition motif 2
 IPR035618  RBM10, OCRE domain
 IPR035979  RNA-binding domain superfamily
 IPR036443  Zinc finger, RanBP2-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0008285 negative regulation of cell proliferation IGI
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0034391 regulation of smooth muscle cell apoptotic process IGI
 biological_processGO:0034393 positive regulation of smooth muscle cell apoptotic process IDA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IMP
 biological_processGO:0070935 3"-UTR-mediated mRNA stabilization IDA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0016607 nuclear speck ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0035198 miRNA binding ISS
 molecular_functionGO:0042802 identical protein binding ISO
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Rettm1Heno/Rettm2(RET)Jmi
Genetic Background: involves: 129X1/SvJ * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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