ENSMUSG00000032997


Mus musculus

Features
Gene ID: ENSMUSG00000032997
  
Biological name :Chpf
  
Synonyms : Chondroitin sulfate synthase 2 / Chpf / Q6IQX7
  
Possible biological names infered from orthology : chondroitin polymerizing factor / Q8IZ52
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: C4
Gene start: 75474569
Gene end: 75479307
  
Corresponding Affymetrix probe sets: 10355864 (MoGene1.0st)   1454023_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000092412
Ensembl peptide - ENSMUSP00000122057
Ensembl peptide - ENSMUSP00000117253
Ensembl peptide - ENSMUSP00000078199
NCBI entrez gene - 74241     See in Manteia.
MGI - MGI:106576
RefSeq - NM_001001565
RefSeq - NM_001001566
RefSeq Peptide - NP_001001565
RefSeq Peptide - NP_001001566
swissprot - Q6IQX7
swissprot - D6RFA4
swissprot - D6RGS3
Ensembl - ENSMUSG00000032997
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chpfbENSDARG00000078037Danio rerio
 CHPFENSGALG00000032915Gallus gallus
 CHPFENSG00000123989Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Chpf2 / chondroitin polymerizing factor 2 / Q9P2E5*ENSMUSG0000003818156
Chsy1 / Q6ZQ11 / Chondroitin sulfate synthase 1 / Q86X52*ENSMUSG0000003264021
Chsy3 / Q5DTK1 / Chondroitin sulfate synthase 3 / Q70JA7*ENSMUSG0000005815221
Q766D5 / B4galnt4 / N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 / Q76KP1* / beta-1,4-N-acetyl-galactosaminyltransferase 4*ENSMUSG0000005562913
Q8C1F4 / Csgalnact2 / Chondroitin sulfate N-acetylgalactosaminyltransferase 2 / Q8N6G5*ENSMUSG0000004204213
Q6L8S8 / B4galnt3 / Beta-1,4-N-acetylgalactosaminyltransferase 3 / Q6L9W6* / beta-1,4-N-acetyl-galactosaminyltransferase 3*ENSMUSG0000004137212
Q8BJQ9 / Csgalnact1 / Chondroitin sulfate N-acetylgalactosaminyltransferase 1 / Q8TDX6*ENSMUSG0000003635612


Protein motifs (from Interpro)
Interpro ID Name
 IPR008428  Chondroitin N-acetylgalactosaminyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030206 chondroitin sulfate biosynthetic process IMP
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032580 Golgi cisterna membrane IEA
 molecular_functionGO:0008376 acetylgalactosaminyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IMP
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0047238 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
 molecular_functionGO:0050510 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity IEA


Pathways (from Reactome)
Pathway description
Chondroitin sulfate biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Erbb4tm1Grl/Erbb4tm1Grl,Tg(Myh6-ERBB4)HT2Gass/0
Genetic Background: B6.Cg-Erbb4tm1Grl Tg(Myh6-ERBB4)HT2Gass

Allelic Composition: Chpftm1.1Hwat/Chpftm1.1Hwat
Genetic Background: involves: C57BL/6

 MP:0002764 short tibia " reduced length of the medial and larger bone of the lower leg" [J:12736, pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
Show

Allelic Composition: Chpftm1.1Hwat/Chpftm1.1Hwat
Genetic Background: involves: C57BL/6

 MP:0003109 short femur "reduced length of the long bone of the thigh" [ava:Anna V. Anagnostopoulos, Mouse Genome Informatics Curator, Stedman s Medical Dictionary, 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Chpftm1.1Hwat/Chpftm1.1Hwat
Genetic Background: involves: C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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