ENSG00000123989


Homo sapiens

Features
Gene ID: ENSG00000123989
  
Biological name :CHPF
  
Synonyms : chondroitin polymerizing factor / CHPF / Q8IZ52
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q35
Gene start: 219538947
Gene end: 219543787
  
Corresponding Affymetrix probe sets: 202175_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000243776
Ensembl peptide - ENSP00000362998
Ensembl peptide - ENSP00000445571
NCBI entrez gene - 79586     See in Manteia.
OMIM - 610405
RefSeq - XM_011511838
RefSeq - NM_001195731
RefSeq - NM_024536
RefSeq Peptide - NP_001182660
RefSeq Peptide - NP_078812
swissprot - Q8IZ52
swissprot - F8W6H2
Ensembl - ENSG00000123989
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chpfbENSDARG00000078037Danio rerio
 CHPFENSGALG00000032915Gallus gallus
 ChpfENSMUSG00000032997Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CHPF2 / Q9P2E5 / chondroitin polymerizing factor 2ENSG0000003310057
CHSY3 / Q70JA7 / chondroitin sulfate synthase 3ENSG0000019810821
CHSY1 / Q86X52 / chondroitin sulfate synthase 1ENSG0000013187321
Q76KP1 / B4GALNT4 / beta-1,4-N-acetyl-galactosaminyltransferase 4ENSG0000018227214
Q8N6G5 / CSGALNACT2 / chondroitin sulfate N-acetylgalactosaminyltransferase 2ENSG0000016982613
Q8TDX6 / CSGALNACT1 / chondroitin sulfate N-acetylgalactosaminyltransferase 1ENSG0000014740813
Q6L9W6 / B4GALNT3 / beta-1,4-N-acetyl-galactosaminyltransferase 3ENSG0000013904412


Protein motifs (from Interpro)
Interpro ID Name
 IPR008428  Chondroitin N-acetylgalactosaminyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030206 chondroitin sulfate biosynthetic process TAS
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032580 Golgi cisterna membrane IEA
 molecular_functionGO:0008376 acetylgalactosaminyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0047238 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity TAS
 molecular_functionGO:0050510 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity TAS


Pathways (from Reactome)
Pathway description
Chondroitin sulfate biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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