ENSMUSG00000034333


Mus musculus

Features
Gene ID: ENSMUSG00000034333
  
Biological name :Zbed4
  
Synonyms : Q80WQ9 / Zbed4 / zinc finger, BED type containing 4
  
Possible biological names infered from orthology : O75132
  
Species: Mus musculus
  
Chr. number: 15
Strand: 1
Band: E3
Gene start: 88751660
Gene end: 88784516
  
Corresponding Affymetrix probe sets: 10400141 (MoGene1.0st)   10426093 (MoGene1.0st)   1427090_at (Mouse Genome 430 2.0 Array)   1431759_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000035437
NCBI entrez gene - 223773     See in Manteia.
MGI - MGI:2682302
RefSeq - XM_006520841
RefSeq - NM_181412
RefSeq - XM_006520840
RefSeq Peptide - NP_852077
swissprot - Q80WQ9
Ensembl - ENSMUSG00000034333
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zbed4ENSDARG00000024306Danio rerio
 ZBED4ENSGALG00000032659Gallus gallus
 ZBED4ENSG00000100426Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Zbed6 / D2EAC2 / zinc finger, BED type containing 6 / P86452*ENSMUSG0000010204918
D2EAC2 / Gm38394 / predicted gene, 38394 / ZBED6* / P86452* / zinc finger BED-type containing 6*ENSMUSG0000009441018


Protein motifs (from Interpro)
Interpro ID Name
 IPR003656  Zinc finger, BED-type
 IPR008906  HAT, C-terminal dimerisation domain
 IPR012337  Ribonuclease H-like superfamily
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm ISS
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr