ENSMUSG00000038611


Mus musculus

Features
Gene ID: ENSMUSG00000038611
  
Biological name :Phrf1
  
Synonyms : A6H619 / PHD and RING finger domain-containing protein 1 / Phrf1
  
Possible biological names infered from orthology : PHD and ring finger domains 1 / Q9P1Y6
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: F5
Gene start: 141228784
Gene end: 141262750
  
Corresponding Affymetrix probe sets: 10558847 (MoGene1.0st)   1437115_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000123351
Ensembl peptide - ENSMUSP00000117393
Ensembl peptide - ENSMUSP00000147372
Ensembl peptide - ENSMUSP00000120759
Ensembl peptide - ENSMUSP00000101648
Ensembl peptide - ENSMUSP00000113195
NCBI entrez gene - 101471     See in Manteia.
MGI - MGI:2141847
RefSeq - XM_011249837
RefSeq - XM_006536140
RefSeq - XM_006536141
RefSeq - XM_006536142
RefSeq - XM_006536143
RefSeq - XM_006536144
RefSeq - XM_006536145
RefSeq - NM_001081118
RefSeq - XM_006536137
RefSeq - XM_006536138
RefSeq - XM_006536139
RefSeq Peptide - NP_001074587
swissprot - A6H619
swissprot - F6WXS6
swissprot - F7ANA1
swissprot - A0A1B0GR47
swissprot - D6RI35
Ensembl - ENSMUSG00000038611
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phrf1ENSDARG00000075252Danio rerio
 PHRF1ENSGALG00000006873Gallus gallus
 PHRF1ENSG00000070047Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Scaf1 / Q5U4C3 / Splicing factor, arginine/serine-rich 19 / Q9H7N4* / SR-related CTD associated factor 1*ENSMUSG0000003840618
Scaf11 / SR-related CTD associated factor 11 / Q99590*ENSMUSG0000003322814


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR001965  Zinc finger, PHD-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006397 mRNA processing IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070063 RNA polymerase binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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