ENSMUSG00000033228


Mus musculus

Features
Gene ID: ENSMUSG00000033228
  
Biological name :Scaf11
  
Synonyms : Scaf11 / SR-related CTD associated factor 11
  
Possible biological names infered from orthology : Q99590
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: F1
Gene start: 96411699
Gene end: 96460843
  
Corresponding Affymetrix probe sets: 10431856 (MoGene1.0st)   1434691_at (Mouse Genome 430 2.0 Array)   1452884_at (Mouse Genome 430 2.0 Array)   1452885_at (Mouse Genome 430 2.0 Array)   1460445_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000154368
Ensembl peptide - ENSMUSP00000154674
Ensembl peptide - ENSMUSP00000044898
Ensembl peptide - ENSMUSP00000154059
Ensembl peptide - ENSMUSP00000154321
NCBI entrez gene - 72193     See in Manteia.
MGI - MGI:1919443
RefSeq - XM_006521431
RefSeq - NM_028148
RefSeq - XM_011245736
RefSeq - XM_006521430
RefSeq Peptide - NP_082424
swissprot - E9PZM7
Ensembl - ENSMUSG00000033228
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scaf11ENSDARG00000045885Danio rerio
 SCAF11ENSGALG00000028849Gallus gallus
 Q99590ENSG00000139218Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Phrf1 / A6H619 / PHD and RING finger domain-containing protein 1 / Q9P1Y6* / PHD and ring finger domains 1*ENSMUSG0000003861116
Scaf1 / Q5U4C3 / Splicing factor, arginine/serine-rich 19 / Q9H7N4* / SR-related CTD associated factor 1*ENSMUSG0000003840613


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IEA
 biological_processGO:0000375 RNA splicing, via transesterification reactions IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0016604 nuclear body IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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