ENSG00000139218


Homo sapiens

Features
Gene ID: ENSG00000139218
  
Biological name :SCAF11
  
Synonyms : Q99590 / SCAF11 / SR-related CTD associated factor 11
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q12
Gene start: 45919131
Gene end: 45992120
  
Corresponding Affymetrix probe sets: 1570507_at (Human Genome U133 Plus 2.0 Array)   206989_s_at (Human Genome U133 Plus 2.0 Array)   209376_x_at (Human Genome U133 Plus 2.0 Array)   213850_s_at (Human Genome U133 Plus 2.0 Array)   225336_at (Human Genome U133 Plus 2.0 Array)   232597_x_at (Human Genome U133 Plus 2.0 Array)   235579_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000378839
Ensembl peptide - ENSP00000378840
Ensembl peptide - ENSP00000478596
Ensembl peptide - ENSP00000477742
Ensembl peptide - ENSP00000449812
Ensembl peptide - ENSP00000448864
Ensembl peptide - ENSP00000446746
Ensembl peptide - ENSP00000266589
Ensembl peptide - ENSP00000358374
NCBI entrez gene - 9169     See in Manteia.
OMIM - 603668
RefSeq - XM_017020223
RefSeq - XM_005269230
RefSeq - XM_011538984
RefSeq - XM_011538985
RefSeq - XM_017020217
RefSeq - XM_017020218
RefSeq - XM_017020219
RefSeq - XM_017020220
RefSeq - XM_017020221
RefSeq - XM_017020222
RefSeq - NM_004719
RefSeq Peptide - NP_004710
swissprot - A0A0A0MTP7
swissprot - A0A087WUE7
swissprot - A0A087WTB7
swissprot - F8VXG7
swissprot - F8W6K1
swissprot - A8MUK0
swissprot - A8MTP4
swissprot - Q99590
Ensembl - ENSG00000139218
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scaf11ENSDARG00000045885Danio rerio
 SCAF11ENSGALG00000028849Gallus gallus
 Scaf11ENSMUSG00000033228Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PHRF1 / Q9P1Y6 / PHD and ring finger domains 1ENSG0000007004719
SCAF1 / Q9H7N4 / SR-related CTD associated factor 1ENSG0000012646114


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IDA
 biological_processGO:0000375 RNA splicing, via transesterification reactions IDA
 biological_processGO:0006397 mRNA processing TAS
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr