ENSGALG00000028849


Gallus gallus

Features
Gene ID: ENSGALG00000028849
  
Biological name :SCAF11
  
Synonyms : SCAF11 / SR-related CTD associated factor 11
  
Possible biological names infered from orthology : Q99590
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 30864013
Gene end: 30895009
  
Corresponding Affymetrix probe sets: Gga.2498.1.S1_at (Chicken Array)   GgaAffx.6073.1.S1_at (Chicken Array)   GgaAffx.6074.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043661
Ensembl peptide - ENSGALP00000058085
Ensembl peptide - ENSGALP00000041989
NCBI entrez gene - 417805     See in Manteia.
RefSeq - XM_015281295
RefSeq - NM_001195570
RefSeq - XM_015281282
RefSeq - XM_015281287
RefSeq - XM_015281291
RefSeq Peptide - NP_001182499
swissprot - A0A1D5PYN0
swissprot - A0A1D5NTK4
swissprot - R4GIP8
Ensembl - ENSGALG00000028849
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scaf11ENSDARG00000045885Danio rerio
 Q99590ENSG00000139218Homo sapiens
 Scaf11ENSMUSG00000033228Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PHRF1 / PHD and ring finger domains 1 / A6H619* / Q9P1Y6* / PHD and RING finger domain-containing protein 1 *ENSGALG0000000687318


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IEA
 biological_processGO:0000375 RNA splicing, via transesterification reactions IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0016604 nuclear body IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr