ENSMUSG00000039086


Mus musculus

Features
Gene ID: ENSMUSG00000039086
  
Biological name :Ss18l1
  
Synonyms : Q8BW22 / Ss18l1 / SS18, nBAF chromatin remodeling complex subunit like 1
  
Possible biological names infered from orthology : O75177 / SS18L1, nBAF chromatin remodeling complex subunit
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: H4
Gene start: 180042509
Gene end: 180070201
  
Corresponding Affymetrix probe sets: 10479311 (MoGene1.0st)   1436911_at (Mouse Genome 430 2.0 Array)   1447700_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000041288
NCBI entrez gene - 269397     See in Manteia.
MGI - MGI:2444061
RefSeq - XM_006500632
RefSeq - NM_178750
RefSeq - XM_006500631
RefSeq Peptide - NP_848865
swissprot - Q8BW22
Ensembl - ENSMUSG00000039086
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O75177ENSG00000184402Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ss18 / Q62280 / SS18, nBAF chromatin remodeling complex subunit / Q15532*ENSMUSG0000003701363
Q9D174 / Ss18l2 / SS18, nBAF chromatin remodeling complex subunit like 2 / Q9UHA2* / SS18 like 2*ENSMUSG0000003252610


Protein motifs (from Interpro)
Interpro ID Name
 IPR007726  SS18 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated ISO
 biological_processGO:0016358 dendrite development IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0050773 regulation of dendrite development IEA
 biological_processGO:0050775 positive regulation of dendrite morphogenesis IMP
 cellular_componentGO:0000775 chromosome, centromeric region ISS
 cellular_componentGO:0000776 kinetochore ISO
 cellular_componentGO:0000777 condensed chromosome kinetochore IEA
 cellular_componentGO:0000780 condensed nuclear chromosome, centromeric region IDA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0071565 nBAF complex IDA
 molecular_functionGO:0003677 DNA binding ISO
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISO
 molecular_functionGO:0003713 transcription coactivator activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000783 abnormal forebrain morphology "malformed or absent anterior primitive cerebral vesicle; most rostral of three primary vesicles of the embryonic neural tube" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:38857]
Show

Allelic Composition: Col4a1Svc/Col4a1+
Genetic Background: involves: BALB/cAnN * C3H/HeN

 MP:0000788 abnormal cerebral cortex morphology "malformed gray cellular mantle covering the surface of the brain" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:38857]
Show

Allelic Composition: Col4a1Svc/Col4a1+
Genetic Background: involves: BALB/cAnN * C3H/HeN

 MP:0000841 abnormal hindbrain morphology "malformed caudal region of the brain; includes cerebellum, pons and medulla oblongata" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:45302]
Show

Allelic Composition: Col4a1Svc/Col4a1+
Genetic Background: involves: BALB/cAnN * C3H/HeN

 MP:0000852 small cerebellum "reduced size of cerebellum" [MGI:CLS, J:17203, J:67524]
Show

Allelic Composition: Col4a1Svc/Col4a1+
Genetic Background: involves: BALB/cAnN * C3H/HeN

 MP:0001265 reduced body size "smaller than average body weight, height and/or length of an organism compared to controls" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:23170]
Show

Allelic Composition: Col4a1Svc/Col4a1+
Genetic Background: involves: BALB/cAnN * C3H/HeN

 MP:0001405 impaired coordination "reduced ability to execute integrated movements of muscle" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Col4a1Svc/Col4a1+
Genetic Background: involves: BALB/cAnN * C3H/HeN

 MP:0001924 infertility "inability to produce live offspring" [J:47225]
Show

Allelic Composition: Col4a1Svc/Col4a1+
Genetic Background: involves: BALB/cAnN * C3H/HeN

 MP:0002083 premature death "death after 3 weeks of age, but before normal life span" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Col4a1Svc/Col4a1+
Genetic Background: involves: BALB/cAnN * C3H/HeN

 MP:0008267 abnormal hippocampus CA3 region morphology 
Show

Allelic Composition: Col4a1Svc/Col4a1+
Genetic Background: involves: BALB/cAnN * C3H/HeN

 MP:0011089 complete perinatal lethality "death of all organisms of a given genotype in a population within the perinatal period (Mus: E18.5 through postnatal day 1)" [MGI:csmith]
Show

Allelic Composition: Ss18tm1Adg/Ss18tm1Adg
Genetic Background: B6.Cg-Ss18tm1Adg

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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