ENSMUSG00000039477


Mus musculus

Features
Gene ID: ENSMUSG00000039477
  
Biological name :Tnrc18
  
Synonyms : Tnrc18 / trinucleotide repeat-containing 18 protein isoform A
  
Possible biological names infered from orthology : O15417 / trinucleotide repeat containing 18
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: G2
Gene start: 142724661
Gene end: 142817662
  
Corresponding Affymetrix probe sets: 10535342 (MoGene1.0st)   1427267_at (Mouse Genome 430 2.0 Array)   1434825_at (Mouse Genome 430 2.0 Array)   1439550_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000143178
Ensembl peptide - ENSMUSP00000114769
Ensembl peptide - ENSMUSP00000117651
NCBI entrez gene - 231861     See in Manteia.
MGI - MGI:3648294
RefSeq - XM_011240977
RefSeq - XM_006504688
RefSeq - XM_006504689
RefSeq - XM_006504690
RefSeq - XM_006504691
RefSeq - XM_011240976
RefSeq - NM_001122730
RefSeq - NM_178242
RefSeq - XM_006504687
RefSeq Peptide - NP_839973
RefSeq Peptide - NP_001116202
swissprot - F6Z7L1
swissprot - D3YV17
swissprot - A0A0G2JFH8
Ensembl - ENSMUSG00000039477
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnrc18ENSDARG00000077052Danio rerio
 TNRC18ENSGALG00000040770Gallus gallus
 O15417ENSG00000182095Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Bahcc1 / Q3UHR0 / Mus musculus BAH domain and coiled-coil containing 1 (Bahcc1), transcript variant 2, mRNA. / BAH domain and coiled-coil containing 1*ENSMUSG0000003974125


Protein motifs (from Interpro)
Interpro ID Name
 IPR001025  Bromo adjacent homology (BAH) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003682 chromatin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr